Detail information of BGIOSGA016140_circ_g.5


General Information
CircRNA Name BGIOSGA016140_circ_g.5
ID in PlantcircBase osi_circ_014240
Alias Chr04:15495509_15498455(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 13167444-13170383  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA016140
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016140_circ_g.1 BGIOSGA016140_circ_g.2 BGIOSGA016140_circ_g.3 BGIOSGA016140_circ_g.4 BGIOSGA016140_circ_g.6 BGIOSGA016140_circ_g.7 BGIOSGA016140_circ_g.8
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered BGIOSGA016140-TA:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGTCAAGTCGATCATTGGATTGAGCCGTATCTCAGGCTAACAATTGATCGGCTGCGTCGTGCA
GTGAAGCCGTATCTGAAAAGCTTACTTGTACAAGTGggcagcatgggttgctgggcagtatgct
catatcaatttctcagatcaaaacaattttcgcaaagctatgcattgtgtaatctctggtttgc
gtgatcca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGCAGCATGGGTTGCTGGGCAGTATGCTCATATCAATTTCTCAGATCAAAACAATTTTCGCAAA
GCTATGCATTGTGTAATCTCTGGTTTGCGTGATCCAGAACTTCCTGTTAGGGTGGATTCAGTCT
TTGCACTCCGTTCTTTTGTTGAAGCATGCAAAGGTAGTCTTTATTTAATTTCTTAGAGACCTAA
TTAACTTGGATCACCCTTTCGAATAGATCACAATCTATATTTTGTATTTCTTCTACAGATCTAG
ATGAGATCCGACCAATTCTTCCTCAACTACTTGATGGTATTCTATCACTTTCTTCAACTTTTTT
TTTAATTTTATTGTGGTTAAATCATGCTTTAAGTATTATTTGCAGAATTTTTTAAGCTTATGAG
TGAAGTTGAGAATGAAGATCTCGTTTTCACCCTTGAGACAATTGTTGACAAATTTGGTGAAGAG
ATGGCACCATATGCACTTGGTTTGTGCCAGAGTTTGGTATGTTGCCCCTCAGTGCATTGTGTTT
AGCCCAATAAGTTCTTCTGTTCCTTTGAACTTCATGTTACTGTTTTTGATAGGCTGCTGCTTTC
TGGAGATGCATGGCTAGTTCAGAAGCTGACGAAGAAGTTGAGGACACTGGTGCTTTGGCTGCTG
TTGGTTGCTTACGTGCGATAAGCACAATCCTTGAGTCCATTAGTAGCCTTCCTCATTTGTTTCC
CCAAATAGAGCTGACTTTGTTGCCTATTTTACGAAGAATGTTGACTTCAGATGGTCAAGGTATA
AAATTATTCACTCATAACTATGGATCCACAGTTAAAAAAACCAAAGGCTCTATCTTTCAAATAT
GGATCCACATGATTAGATGAGATCATTCACACCAATTTGTATGCATGTGCAAAAGGGTCATTTT
AAAATGAAGATCCTTGTGGAGGAGGATGGCTGGATGGGTGTACAAGTAAACAAGCCATCACCCC
AACTCTTACTTTGAAAAGAGTAAAGATCAAGATATAGCATATTCAGTTCAACTAATCAACTAGA
ATGCACCTTTTCTATTTCATGTCTATTCACTTCATTTACTTAGGATGGGTCAATGGGTAGGCTT
GACCCATGCTCATCCCTGGTGATATACCTTTAACCTGCTAGATACTTGTACAAAGTTACAAACT
TACAATTGAATTGTTTGAACTCAAATTGTTATCAAAGGTTTAAGAGTTGTTTGTTTTAAATTTA
ATCAGGTTTGGGGTGTTTCTTGCAGTTTTCCGCTGATGCATTTGACTCTGTCTTGCAGATGTGT
ATGAAGAAGTTCTGGAGATAGTCTCCTATATGACATTTTACTCACCAACCATTTCACTGGAAAT
GTGGGGCTTGTGGCCTTTGATGATGGAGGCCCTTAATGATTGGGCCATTGATTTCTTTGAGAGT
AAGTCTAGTTTTGAATGGCAAGCAATTATGTTTGTTTTAAACTGAGAGTTCTAGATTAAGCATA
TTCCTGGGTTTTCTTGCAGTTTTATGTTTGTTATATTTGCTTGTGCTATTTTCCAATGACAATC
TTGTTTAGTTGTATGAATGCTTGTAATTTGGAAAGTCATGCATGATTTAAAATAATATCTGAAT
CACCTTGTATTAGTTTCCATGTGCTCACTTCACTAGTTTGTTCAGTTTGCATGTCATATTATTT
TCTGATTATTTTTTTATTTGGTTCGTGCTCATTTATAAAATTCTTCCAAGTCGCTAATAAAAAA
TGATTAGGTTTCCTAACCTTAACCTGGATTTTAGCAGCTCAAACCTTTTTTTTTGTGTCCAGCT
ACTAATCTAGTTAGTCTCAGATTATGTTTGGCTAGATCTGCTTTGTTGTTTTGATTATTAGTAA
AAGAACAAACTATTATAGTTGAGGTCGGCTTGCTTATTGCTGCACCTATTTTGTGGGTCAACTT
ATTCCTCACTTAGAATGGTTCGAAAGGCATTTATTGTGTTAAATTAATGCTTCCTAACGTGCAT
GTGTTTGCAAGATTAGACCTTCAACCAATCTAATACCTTGGACCAAATGCAGCCTTTGCATTGT
CTATTCTTACATTATTCATTCGTTAGGATTATATAAGATGGTTATGCCACTTAGTAAGGAATTG
AATTTATGAAACTAGAACCATCTTGTATTGTTAAGATTCTGTTTAATTGAATTGAAATTATGAT
TTCTGTGTGATAGTTTAGCATGCCGGTATCTGGTATCCATTATGCAAAAGGAAAATTTTGTATT
CACATGTGCATCCAGATTTTAGATAAGAACATCAGGAATAGTTGTGTCATCGTTTGTTCCTTTG
AATTGGAATCCTTGTTTTACATATTTGGTATAGTACTAGAAAGTATTGAAATGCCAACTGCTTG
GTTGTCTATCCTTCAGAATTTTTTTTAGTCAGCTGCTAAGACTGTTTCTATCTGTAGAAAATTG
CTTGGTTCTACCCTCAGGCCACTAGATGGAACTAATCTCCTACCATCAACTATATTTTCAGAAG
CAATTGTATTATCTTTGACATCCTTTTGCTACATTATTCAATGTTCTTATTGCCCTGCAGATAT
TCTGGTACCATTAGACAACTACATTTCCCGTGGCACTGATCAATTTATTGCATGCAAAGATCCT
GATTATCAGCAAAGCCTATGGAGAGCACTGTCATCTGTGAGTGAATTAAATTCATGTTGCATTA
AAATTTGCTCTGAAATATTTTGTAAAGTTCCTAGTTCCTGTAATTTTTACAGTTGATTACAAAT
AATTGTAGATTATGACAGACCAAAACATGGAAGATTCTGACATTATACCTGCTCCCAAGCTGAT
TGAAGTCGTTTTTCAAAATTGCAAAGGTCAAGTCGATCATTGGATTGAGCCGTATCTCAGGCTA
ACAATTGATCGGCTGCGTCGTGCAGTGAAGCCGTATCTGAAAAGCTTACTTGTACAAGTG
Conservation Information
Conserved circRNAs zma_circ_002074
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021