Detail information of Os06g0659300_circ_g.12


General Information
CircRNA Name Os06g0659300_circ_g.12
ID in PlantcircBase osa_circ_031842
Alias NA
Organism Oryza sativa
Position chr6: 27141192-27143236  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os06g0659300
Parent gene annotation Similar to Actin filament bundling protein P-115-ABP. (Os06t0659
300-01)
Parent gene strand -
Alternative splicing Os06g0659300_circ_g.4 Os06g0659300_circ_g.5 Os06g0659300_circ_g.6 Os06g0659300_circ_g.7 Os06g0659300_circ_g.8 Os06g0659300_circ_g.9 Os06g0659300_circ_g.10 Os06g0659300_circ_g.11 Os06g0659300_circ_g.13
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os06t0659300-01:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGACCGCATCCACTTCCCTCATTGAAACAGCCATAGAACCCCTAGGTTTTGTAGGGCTGGTCTT
GGGTGATTTTTGCTTCAGGAGAGAAGAAAATGTGTGctctgcagcagatcctgcccgtttcctc
tcttcgagtggtgtctctctacccatccagacataaatttcagatccacagtctagcagatagc
actttgtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCTGCAGCAGATCCTGCCCGTTTCCTCTCTTCGAGTGGTGTCTCTCTACCCATCCAGACATAA
ATTTCAGATCCACAGTCTAGCAGATAGCACTTTGTTGAATCTAGCAACTCTCTTGTTAGAACAT
CAAAATCAACTGGTACTGTCTGACCCTTATTTAGACTGAAAATAAAAAGAAACTAGTGTTTCAT
CAGAAGCAAAAAGAGACATATAGTAACCAAACTTTAGAAAAGATAGCATTTAATGTTAAGATAA
CAAAATTGCCCTAGGATTTGTCCCTACGACATATTACCAGATCAACTTCGAAGAGAAAGCAGAA
TCTTTTCCATTAAGATCAGAAAAGGTTTTTCTTGGAAGAGGTGCAAATCCACCAAAGAGACCCC
AGAATTCACCGGCGTCAGCATCTGCCATCAGCTTGCCGTCCTCTGTTTGAAGGATCAGTTATAA
TTCTGAAAGAAAAAGGTATGACCTCATCCATCTAGACCTTTTTACTCAAATATAAACTTACCAA
CTGAACCTACGTCACATTTGCCCTCATGGTTGCTGTCTTTCAAATATTGCACAACCTCAAGGGC
TTTAGCCCTCTCCTGAATACTTGAATTCGATCCATTGAACTGGAATATTTTGGACTTTGTATCT
AAAATAAATATATCATCATGGTTCAGCGATGATCTTGCAAACGGAACCTGTAGGGAAAAAAGTA
ACGTGGCATATGTATTTTACTATTTGGTAACTATCACCAAACAAGGATAAAATGGCAAAAATGT
ACGAATCATATAAAACTCTCACCTCTTTGACATGGACTGTATGCTTTCCTCTGCAGACAAATAA
CCTTGTCACATGCTCCCGTTCATTGATTTCAGTATGCCTGAAACCAGATGCAATTCCACCTTCC
TCTGGTATAATACAAGGTTTAAAATATGAAAGAAATCTCTCTGTCTCATTCCCCTGTACTTCAC
GGTATTGAACAGCACGTCCACCAAGAGCAGCATCCAATTCCACAGTCTTGATTGCAGCTGTACC
AGCTTCATCCTGTTCATTAATTGAAGTGTAAATTAAAAACGCTAATTTATTATCTAGGATCTCA
GCAAAATGGACAAGAGCTTAGAATTTAAAAACAAACCTGACTGGTATCTTTACCAAGCCAATAA
TGGATATCATGCCGAAAAGAACCATTTTTAAGAGCGGTTGTCTGTCATAATGATAAAGGTAATA
GTTAGTACTAATCAGAATTCCACCATAGCATAAAATTATTCACAACAGGACTGTTCCTACTTTA
AATGCAAACAGAGTATCACCTATAATTATATAGCAGAAACAAGATGCCAAAATAGTAAACAAAA
CACACACACACACACACACACACACAGGGAGAGAAGATATAACTCCTTCTTGTATGAAGAATTG
CTGCTCATGGGAACCAAAAAAAAAAATCTAATGTACTTAAGAGTTCATGTGTAAACAATTACAA
AATTGAAGGGTTGACATCAGACAGCAGACTTTTTGTGTAAAGTTATTGTACCTTCAATATCACA
TAGGAATCTCCTGTGAAAAATCTCCCATGTGATTCCTTGGGAACTGGAACAGCTTGCAGTTTTT
CAATCCGCCATATTTCCAATCCACTGAGGGTTGTTAAGGATAAACATACTGGGATATGTTAACA
GTCATCAAGTAAAGAAATGGAACTAAGCGCACATACTGCAGCACCATGTTAGTTTAATATCTCC
ACTTGCATTCAGTTGAATGTTTTCTCATAGGAATTCGTGTTTAGTGAAAGCATGGCAAGAATGT
TCTATTGGATATAATGGGCTTCATCATTTCAACAATAGCACGCAACGGAATTGAGAGAATTGAA
TATGTATGACATTCTTTAAATGGAAATGTATTAAAGAAGTGAAAATGGCAAAATAGCTGAAGGA
TACTCTTTTTGACCAGCCCCTTGAAAGACCGCATCCACTTCCCTCATTGAAACAGCCATAGAAC
CCCTAGGTTTTGTAGGGCTGGTCTTGGGTGATTTTTGCTTCAGGAGAGAAGAAAATGTGTG
Conservation Information
Conserved circRNAs NA
PMCS 0.189708606
Functional Information
Coding potential Y
Potential coding position 27143231-27141521(+)
27143172-27141194(-)
27141255-27143217(-)
Potential amino acid sequence MCALQQILPVSSLRVVSLYPSRHKFQIHSLADSTLLNLATLLLEHQNQLVLSDPYLDRSTSKRK
QNLFH*(+)
MAVSMREVDAVFQGAGQKDGLEIWRIEKLQAVPVPKESHGRFFTGDSYVILKTTALKNGSFRHD
IHYWLGKDTSQDEAGTAAIKTVELDAALGGRAVQYREVQGNETERFLSYFKPCIIPEEGGIASG
FRHTEINEREHVTRLFVCRGKHTVHVKEVPFARSSLNHDDIFILDTKSKIFQFNGSNSSIQERA
KALEVVQYLKDSNHEGKCDVGSVEDGKLMADADAGEFWGLFGGFAPLPRKTFSDLNGKDSAFSS
KLICLNKGQTVPVDFDVLTRELLDSTKCYLLDCGSEIYVWMGRETPLEERKRAGSAAEHTFSSL
LKQKSPKTSPTKPRGSMAVSMREVDAVFQGAGQKDGLEIWRIEKLQAVPVPKESHGRFFTGDSY
VILKTTALKNGSFRHDIHYWLGKDTSQDEAGTAAIKTVELDAALGGRAVQYREVQGNETERFLS
YFKPCIIPEEGGIASGFRHTEINEREHVTRLFVCRGKHTVHVKEVPFARSSLNHDDIFILDTKS
KIFQFNGSNSSIQERAKALEVVQYLKDSNHEGKCDVGSVEDGKLMADADAGEFWGLFGGFAPLP
RKTFSDLNGKDSAFSSKLICLNKGQTVPVDFDVLTRELLDSTKCYLLDCGSEIYVWMGRETPLE
ERKRAGSAAEHTFSSLLKQKSPKTSPTKPRGSMAVSMREVDAVFQGAGQKDGLEIWRIEKLQAV
PVPKESHGRFFTGDSYVILKTTALKNGSFRHDIHYWLGKDTSQDEAGTAAIKTVELDAALGGRA
VQYREVQGNETERFLSYFKPCIIPEEGGIASGFRHTEINEREHVTRLFVCRGKHTVHVKEVPFA
RSSLNHDDIFILDTKSKIFQFNGSNSSIQERAKALEVVQYLKDSNHEGKCDVGSVEDGKLMADA
DAGEFWGLFGGFAPLPRKTFSDLNGKDSAFSSKLICLNKGQTVPVDFDVLTRELLDSTKCYLLD
CGSEIYVWMGRETPLEERKRAGSAAEHTFSSLLKQKSPKTSPTKPRGSMAVSMREVDAVFQGAG
QKDGLEIWRIEKLQAVPVPKESHGRFFTGDSYVILKTTALKNGSFRHDIHYWLGKDTSQDEAGT
AAIKTVELDAALGGRAVQYREVQGNETERFLSYFKPCIIPEEGGIASGFRHTEINEREHVTRLF
VCRGKHTVHVKEVPFARSSLNHDDIFILDTKSKIFQFNGSNSSIQERAKALEVVQYLKDSNHEG
KCDVGSVEDGKLMADADAGEFWGLFGGFAPLPRKTFSDLNGKDSAFSSKLICLNKGQTVPVDFD
VLTRELLDSTKCYLLDCGSEIYVWMGRETPLEERKRAGSAAE(-)
MSGWVERHHSKRGNGQDLLQSTHFLLS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017