Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os06g0659300_circ_g.12 |
ID in PlantcircBase | osa_circ_031842 |
Alias | NA |
Organism | Oryza sativa |
Position | chr6: 27141192-27143236 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os06g0659300 |
Parent gene annotation |
Similar to Actin filament bundling protein P-115-ABP. (Os06t0659 300-01) |
Parent gene strand | - |
Alternative splicing | Os06g0659300_circ_g.4 Os06g0659300_circ_g.5 Os06g0659300_circ_g.6 Os06g0659300_circ_g.7 Os06g0659300_circ_g.8 Os06g0659300_circ_g.9 Os06g0659300_circ_g.10 Os06g0659300_circ_g.11 Os06g0659300_circ_g.13 |
Support reads | 1 |
Tissues | shoot |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os06t0659300-01:7 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.189708606 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
27143231-27141521(+) 27143172-27141194(-) 27141255-27143217(-) |
Potential amino acid sequence |
MCALQQILPVSSLRVVSLYPSRHKFQIHSLADSTLLNLATLLLEHQNQLVLSDPYLDRSTSKRK QNLFH*(+) MAVSMREVDAVFQGAGQKDGLEIWRIEKLQAVPVPKESHGRFFTGDSYVILKTTALKNGSFRHD IHYWLGKDTSQDEAGTAAIKTVELDAALGGRAVQYREVQGNETERFLSYFKPCIIPEEGGIASG FRHTEINEREHVTRLFVCRGKHTVHVKEVPFARSSLNHDDIFILDTKSKIFQFNGSNSSIQERA KALEVVQYLKDSNHEGKCDVGSVEDGKLMADADAGEFWGLFGGFAPLPRKTFSDLNGKDSAFSS KLICLNKGQTVPVDFDVLTRELLDSTKCYLLDCGSEIYVWMGRETPLEERKRAGSAAEHTFSSL LKQKSPKTSPTKPRGSMAVSMREVDAVFQGAGQKDGLEIWRIEKLQAVPVPKESHGRFFTGDSY VILKTTALKNGSFRHDIHYWLGKDTSQDEAGTAAIKTVELDAALGGRAVQYREVQGNETERFLS YFKPCIIPEEGGIASGFRHTEINEREHVTRLFVCRGKHTVHVKEVPFARSSLNHDDIFILDTKS KIFQFNGSNSSIQERAKALEVVQYLKDSNHEGKCDVGSVEDGKLMADADAGEFWGLFGGFAPLP RKTFSDLNGKDSAFSSKLICLNKGQTVPVDFDVLTRELLDSTKCYLLDCGSEIYVWMGRETPLE ERKRAGSAAEHTFSSLLKQKSPKTSPTKPRGSMAVSMREVDAVFQGAGQKDGLEIWRIEKLQAV PVPKESHGRFFTGDSYVILKTTALKNGSFRHDIHYWLGKDTSQDEAGTAAIKTVELDAALGGRA VQYREVQGNETERFLSYFKPCIIPEEGGIASGFRHTEINEREHVTRLFVCRGKHTVHVKEVPFA RSSLNHDDIFILDTKSKIFQFNGSNSSIQERAKALEVVQYLKDSNHEGKCDVGSVEDGKLMADA DAGEFWGLFGGFAPLPRKTFSDLNGKDSAFSSKLICLNKGQTVPVDFDVLTRELLDSTKCYLLD CGSEIYVWMGRETPLEERKRAGSAAEHTFSSLLKQKSPKTSPTKPRGSMAVSMREVDAVFQGAG QKDGLEIWRIEKLQAVPVPKESHGRFFTGDSYVILKTTALKNGSFRHDIHYWLGKDTSQDEAGT AAIKTVELDAALGGRAVQYREVQGNETERFLSYFKPCIIPEEGGIASGFRHTEINEREHVTRLF VCRGKHTVHVKEVPFARSSLNHDDIFILDTKSKIFQFNGSNSSIQERAKALEVVQYLKDSNHEG KCDVGSVEDGKLMADADAGEFWGLFGGFAPLPRKTFSDLNGKDSAFSSKLICLNKGQTVPVDFD VLTRELLDSTKCYLLDCGSEIYVWMGRETPLEERKRAGSAAE(-) MSGWVERHHSKRGNGQDLLQSTHFLLS*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |