Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os06g0659300_circ_g.4 |
ID in PlantcircBase | osa_circ_031835 |
Alias | Os06circ15618 |
Organism | Oryza sativa |
Position | chr6: 27137415-27140867 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, SMALT, Segemehl |
Parent gene | Os06g0659300 |
Parent gene annotation |
Similar to Actin filament bundling protein P-115-ABP. (Os06t0659 300-01) |
Parent gene strand | - |
Alternative splicing | Os06g0659300_circ_g.5 Os06g0659300_circ_g.6 Os06g0659300_circ_g.7 Os06g0659300_circ_g.8 Os06g0659300_circ_g.9 Os06g0659300_circ_g.10 Os06g0659300_circ_g.11 Os06g0659300_circ_g.12 Os06g0659300_circ_g.13 |
Support reads | 2/1 |
Tissues | panicle/root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os06t0659300-01:12 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.117655845 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
27140821-27137417(-) |
Potential amino acid sequence |
MEGFETVIFRSKFSKWPKKADAVVSDESRGKVAALLKRQGFNVKGLAKAAPVKEEPQPQIDCTG NLQVWRVNGTEKTFLSFSEQCKFYSGDCYIFQYSYPGEEGEECLIGTWFGKKSVQDEKTTAISV ASKMVESLKFQAVMVRLYEGKEPAEFFSIFQNLVIFKGGVSTGYKKFVSENGIEDDTYSENGVA LFRVQGSGPENMQAIQVDTAATSLNSSYCYVLHDGDTLFTWIGNLSSSMDQELAERQLDVIKPN LQSRMLKEGSEYDQFWKLLGVKSEYPSQKIAKDQESDPHLFSCTFSKGVLKVREIFNFTQDDLM TEDVFILDCHSCVFVWVGQRVDTKMRAQALSVGEKFLELDILMENSSQETPVYVITEGSEPQFF TRFFTWDSAKSAMHGNSFERRLSIVKDGVKPKLDELLREVNRPKSHIVRLMEGFETVIFRSKFS KWPKKADAVVSDESRGKVAALLKRQGFNVKGLAKAAPVKEEPQPQIDCTGNLQVWRVNGTEKTF LSFSEQCKFYSGDCYIFQYSYPGEEGEECLIGTWFGKKSVQDEKTTAISVASKMVESLKFQAVM VRLYEGKEPAEFFSIFQNLVIFKGGVSTGYKKFVSENGIEDDTYSENGVALFRVQGSGPENMQA IQVDTAATSLNSSYCYVLHDGDTLFTWIGNLSSSMDQELAERQLDVIKPNLQSRMLKEGSEYDQ FWKLLGVKSEYPSQKIAKDQESDPHLFSCTFSKGVLKVREIFNFTQDDLMTEDVFILDCHSCVF VWVGQRVDTKMRAQALSVGEKFLELDILMENSSQETPVYVITEGSEPQFFTRFFTWDSAKSAMH GNSFERRLSIVKDGVKPKLDELLREVNRPKSHIVRLMEGFETVIFRSKFSKWPKKADAVVSDES RGKVAALLKRQGFNVKGLAKAAPVKEEPQPQIDCTGNLQVWRVNGTEKTFLSFSEQCKFYSGDC YIFQYSYPGEEGEECLIGTWFGKKSVQDEKTTAISVASKMVESLKFQAVMVRLYEGKEPAEFFS IFQNLVIFKGGVSTGYKKFVSENGIEDDTYSENGVALFRVQGSGPENMQAIQVDTAATSLNSSY CYVLHDGDTLFTWIGNLSSSMDQELAERQLDVIKPNLQSRMLKEGSEYDQFWKLLGVKSEYPSQ KIAKDQESDPHLFSCTFSKGVLKVREIFNFTQDDLMTEDVFILDCHSCVFVWVGQRVDTKMRAQ ALSVGEKFLELDILMENSSQETPVYVITEGSEPQFFTRFFTWDSAKSAMHGNSFERRLSIVKDG VKPKLDELLREVNRPKSHIVRLMEGFETVIFRSKFSKWPKKADAVVSDESRGKVAALLKRQGFN VKGLAKAAPVKEEPQPQIDCTGNLQVWRVNGTEKTFLSFSEQCKFYSGDCYIFQYSYPGEEGEE CLIGTWFGKKSVQDEKTTAISVASKMVESLKFQAVMVRLYEGKEPAEFFSIFQNLVIFKGGVST GYKKFVSENGIEDDTYSENGVALFRVQGSGPENMQAIQVDTAATSLNSSYCYVLHDGDTLFTWI GNLSSSMDQELAERQLDVIKPNLQSRMLKEGSEYDQFWKLLGVKSEYPSQKIAKDQESDPHLFS CTFSKGVLKVREIFNFTQDDLMTEDVFILDCHSCVFVWVGQRVDTKMRAQALSVGEKFLELDIL MENSSQETPVYVITEGSEPQFFTRFFTWDSAKSAMHGNSFERRLSIVKDGVKPKLD(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Lu et al., 2015;Chu et al., 2017 |