Detail information of Os06g0659300_circ_g.4


General Information
CircRNA Name Os06g0659300_circ_g.4
ID in PlantcircBase osa_circ_031835
Alias Os06circ15618
Organism Oryza sativa
Position chr6: 27137415-27140867  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, SMALT, Segemehl
Parent gene Os06g0659300
Parent gene annotation Similar to Actin filament bundling protein P-115-ABP. (Os06t0659
300-01)
Parent gene strand -
Alternative splicing Os06g0659300_circ_g.5 Os06g0659300_circ_g.6 Os06g0659300_circ_g.7 Os06g0659300_circ_g.8 Os06g0659300_circ_g.9 Os06g0659300_circ_g.10 Os06g0659300_circ_g.11 Os06g0659300_circ_g.12 Os06g0659300_circ_g.13
Support reads 2/1
Tissues panicle/root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os06t0659300-01:12
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAGGCCATTTACTGAATTTTGATCGGAATATGACAGTCTCAAATCCTTCCATGAGACGAACAAT
ATGAGATTTTGGCCTGTTTACTTCACGAAGTAATTCatctaattttggttttactccatccttc
actatagataacctcctttcaaatgagtttccatgcatctgaaacagtttataagacaacatat
gaggtaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATCTAATTTTGGTTTTACTCCATCCTTCACTATAGATAACCTCCTTTCAAATGAGTTTCCATGC
ATCTGAAACAGTTTATAAGACAACATATGAGGTAATTGATCCTGAAGTTTACACGATGCCAAAA
CATTGGAATCTAGGAAATGCTTAAGCTTACGGCTGATTTTGCAGAGTCCCAAGTGAAGAACCTG
GTGAAAAATTGGGGCTCACTCCCTTCAGTGATGACATAAACTGGTGTTTCTTGTGATGAGTTCT
CCATCAAAATGTCAAGTTCTAAAAATTTCTGGCAAAGAAGGAAGTTGGGAATTAGCAGTATAGA
TTAAAGATAGAATTTGTGAATTTGCTCTAATATAGTAGTCAGTCAATCATGGTATTGTCATATA
CCTCTCCAACGCTCAAAGCTTGTGCTCGCATTTTTGTGTCCACACGTTGTCCAACCCATACGAA
GACACATGAATGACAGTCCAAAATAAAAACGTCCTCTGTCATCAAATCATCTTGAGTAAAGTTG
AATATTTCTCTAACCTGCAATAGAAGAACAGCAATAAATTTTTCATCAGTGTTTTATTTTCATA
CTAATAAGATTTAAGGAATGAACCTCATTATTGCTCACCTTAAGCACTCCTTCATTACCCCCAA
GTGTACCACAGAGAACATTGATTCAGAAAAACAACATGTAAATAAGTAAGGTGCATATTAAATA
AAAAAAATACTGACTAAAATATTAAAGGGTGCATAGAAATTGTGAATTTTTCTTACCCTTTGAA
AAAGTACAAGAGAACAAATGAGGATCACTTTCTTGATCTTTTGCAATCTTCTGGCTGGGGTACT
CTGACTTGACTCCAAGTAGCTTCCAAAACTGATCATATTCTGACCCTTCCTTGAGCATTCTGGA
CTGAAGATTTGGCTGCAGATGAATATATTGGATGAGCATAATGGAAAGGCCAATATTATGGTAG
TCTCTTTGATAGAGATTAGAGAAGAAAAAGGTCAGAACACAAACATGCTCAGGTCAAGCATAAA
CATGTTGTATCTAAAACGCAAACATTACGCTGATATCTAACTTCGGAAGATGCAATTAGAAAGC
AGATACGTGAGGAATACATGGCATGCTGTAGAATTGTAGATACCGTCACATATGGCATATATAC
AATGCTAGTTAGGAACCTTCAACACCACAAAGATATGGAGATGTAATATTGAACCCAGAAGATT
TATATTATGCTTTATGAAGATGCACAAAGTTTTGTTGAAATATGAAAACTGGCTGTCTACCAGA
TAAACCAGAAAATAGAACCACAGTTTGTGAACATATGCGTCATATATATTCATATTATTACAAA
ACTAACAAAGATGCCAACTAGTTATTCATGCACCATGTTCACTGATTACCATGAACAGGAAAGC
AAGAAAATTAGGAGAAAAAATGATATGTCGATGACCTAACATGACGAAAATAAGTCCAACAGGA
TGTATTTACATCAATGCTTCATATTAGAATATTAGTTCCAACAGTAACCACTTCTATATGACAT
GATCATATCGAATAGCATTACTCATACCTTGATCACATCCAGCTGCCTCTCAGCAAGCTCTTGA
TCCATTGACGAGCTTAAATTCCCAATCCATGTAAATAGTGTATCTCCATCATGTAGTACATAAC
AATAAGAAGAGTTCAGCGAGGTAGCAGCCTGGTAAGAAGAATCATATATAATTATATGACGTCA
TACAGTAGTAGAAGCATAATCCACTAGGATAAAAGTGTTCATAAAATGAGTGTAATGCATTTTC
AAGTGAAAAAGAAAGTACCGTATCAACTTGAATGGCTTGCATATTTTCTGGTCCAGAGCCTTGA
ACCCGGAAAAGGGCAACCCCATTTTCTGAATATGTGTCATCCTCAATACCGTTTTCTGAGACAA
ATTTCTTATACCCAGTACTAACACCACCCTGTAAGTATTGAAAAATTAAATGACACGGATGCGG
CTACTTATTGTCAACAAAGATAGGGCAGTGAAATGATTGCAGAACTTGGTAAAAGGCAAACCTT
GAAGATAACCAGGTTCTGAAATATTGAGAAAAACTCAGCTGGTTCCTTTCCTTCATAAAGGCGA
ACCTGTGATAGACAGTATTGTGATATCGAGATAGTGAACCAAGATTTGCACACATCTTTCAAAT
AAAACTAGAAATTTACCATGACTGCCTGAAATTTCAGAGACTCAACCATCTTGCTAGCAACTGA
AATGGCTGTAGTCTTCTCGTCCTGTTTTCAAAAAATGAACCATGAAATTAGATAATTCTCCAAC
TTGAGCAATCAAGATATAGAGTGATTAATCTACCCTCAATTCACAGATAGAATTGAATATAACA
AGAAATGAACAAATTTCAAGAAACTAGGTACTACCTCATACTCATCAATAGTGACTGACTGGTG
TAGTATGACTAATTTTGAGAATATAAGTATATTCTAAAAAATCTACTGCTCATGTTCTACATAA
GAGAGAAAGATGAGCAAATACATTCCCACTTGTCACTGTGCCAAATGCCTTGTTGGCATCTCAA
TAGTTTGATAGTGCACTGCTTTGCACTGCATGAGTTAAGATATCCATTTTAAAAAAGAACATAG
TACAAACAGCTGCTCAACAGCTCAAATGCTTTGCCTTTTAGATGGGAGAACAAGTTGGGGTTGC
AAGTCATACTTCACTAATTCACCTTAATCAGTCATCAATACATGCATGACTGTTATGGATTACC
ATCAGCGTTTAAAATCACTACAATGGATGGGAAATACATCCAAATGTTACCTGAACACTCTTTT
TCCCGAACCAAGTACCAATGAGACACTCCTCGCCTTCCTCACCAGGATAGCTATATTGAAAGAT
ATAACAGTCCCCACTGTAGAATTTGCATTGCTCAGAGAATGAAAGGAATGTCTTTTCAGTGCCA
TTTACACGCCAAACCTACAAGATACAGCCATTAAATTTTTAGCAGCATATTGTTCCATGTATAT
TTGTTATTTACAGAAGAGTTCAACAAAAGAAAATGCAACAATTTATAGATAAATGTGATGTCAC
TAAAAATCTTAAGCACTAAAAATCTTAAGCAAGGAAAAAAGTTTGCAGACCTGCAGGTTGCCTG
TGCAATCAATTTGAGGTTGAGGCTCTTCCTTCACAGGAGCAGCTTTTGCAAGACCCTTAACATT
AAATCCTTGCCGCTTAAGAAGAGCTACAGAGAGAGAAAAAATATTTACCAACATATTTCAGTAC
TGAAAGAAAATAAACAAGGATGATCTGTGATATATGCTAACCTGCAACTTTTCCTCTGCTCTCA
TCAGACACAACAGCATCAGCTTTCTTAGGCCATTTACTGAATTTTGATCGGAATATGACAGTCT
CAAATCCTTCCATGAGACGAACAATATGAGATTTTGGCCTGTTTACTTCACGAAGTAATTC
Conservation Information
Conserved circRNAs NA
PMCS 0.117655845
Functional Information
Coding potential Y
Potential coding position 27140821-27137417(-)
Potential amino acid sequence MEGFETVIFRSKFSKWPKKADAVVSDESRGKVAALLKRQGFNVKGLAKAAPVKEEPQPQIDCTG
NLQVWRVNGTEKTFLSFSEQCKFYSGDCYIFQYSYPGEEGEECLIGTWFGKKSVQDEKTTAISV
ASKMVESLKFQAVMVRLYEGKEPAEFFSIFQNLVIFKGGVSTGYKKFVSENGIEDDTYSENGVA
LFRVQGSGPENMQAIQVDTAATSLNSSYCYVLHDGDTLFTWIGNLSSSMDQELAERQLDVIKPN
LQSRMLKEGSEYDQFWKLLGVKSEYPSQKIAKDQESDPHLFSCTFSKGVLKVREIFNFTQDDLM
TEDVFILDCHSCVFVWVGQRVDTKMRAQALSVGEKFLELDILMENSSQETPVYVITEGSEPQFF
TRFFTWDSAKSAMHGNSFERRLSIVKDGVKPKLDELLREVNRPKSHIVRLMEGFETVIFRSKFS
KWPKKADAVVSDESRGKVAALLKRQGFNVKGLAKAAPVKEEPQPQIDCTGNLQVWRVNGTEKTF
LSFSEQCKFYSGDCYIFQYSYPGEEGEECLIGTWFGKKSVQDEKTTAISVASKMVESLKFQAVM
VRLYEGKEPAEFFSIFQNLVIFKGGVSTGYKKFVSENGIEDDTYSENGVALFRVQGSGPENMQA
IQVDTAATSLNSSYCYVLHDGDTLFTWIGNLSSSMDQELAERQLDVIKPNLQSRMLKEGSEYDQ
FWKLLGVKSEYPSQKIAKDQESDPHLFSCTFSKGVLKVREIFNFTQDDLMTEDVFILDCHSCVF
VWVGQRVDTKMRAQALSVGEKFLELDILMENSSQETPVYVITEGSEPQFFTRFFTWDSAKSAMH
GNSFERRLSIVKDGVKPKLDELLREVNRPKSHIVRLMEGFETVIFRSKFSKWPKKADAVVSDES
RGKVAALLKRQGFNVKGLAKAAPVKEEPQPQIDCTGNLQVWRVNGTEKTFLSFSEQCKFYSGDC
YIFQYSYPGEEGEECLIGTWFGKKSVQDEKTTAISVASKMVESLKFQAVMVRLYEGKEPAEFFS
IFQNLVIFKGGVSTGYKKFVSENGIEDDTYSENGVALFRVQGSGPENMQAIQVDTAATSLNSSY
CYVLHDGDTLFTWIGNLSSSMDQELAERQLDVIKPNLQSRMLKEGSEYDQFWKLLGVKSEYPSQ
KIAKDQESDPHLFSCTFSKGVLKVREIFNFTQDDLMTEDVFILDCHSCVFVWVGQRVDTKMRAQ
ALSVGEKFLELDILMENSSQETPVYVITEGSEPQFFTRFFTWDSAKSAMHGNSFERRLSIVKDG
VKPKLDELLREVNRPKSHIVRLMEGFETVIFRSKFSKWPKKADAVVSDESRGKVAALLKRQGFN
VKGLAKAAPVKEEPQPQIDCTGNLQVWRVNGTEKTFLSFSEQCKFYSGDCYIFQYSYPGEEGEE
CLIGTWFGKKSVQDEKTTAISVASKMVESLKFQAVMVRLYEGKEPAEFFSIFQNLVIFKGGVST
GYKKFVSENGIEDDTYSENGVALFRVQGSGPENMQAIQVDTAATSLNSSYCYVLHDGDTLFTWI
GNLSSSMDQELAERQLDVIKPNLQSRMLKEGSEYDQFWKLLGVKSEYPSQKIAKDQESDPHLFS
CTFSKGVLKVREIFNFTQDDLMTEDVFILDCHSCVFVWVGQRVDTKMRAQALSVGEKFLELDIL
MENSSQETPVYVITEGSEPQFFTRFFTWDSAKSAMHGNSFERRLSIVKDGVKPKLD(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015;Chu et al., 2017