Plant Circular RNA Database

Detail information of Os06g0659300_circ_g.5

			
						 General Information
					
						CircRNA Name
						Os06g0659300_circ_g.5
					
						ID in PlantcircBase
						osa_circ_031836
					
						Alias
						Os_ciR10540
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr6: 27138175-27141354  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							Os06g0659300						
					
						Parent gene annotation
						
							Similar to Actin filament bundling protein P-115-ABP. (Os06t0659
300-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os06g0659300_circ_g.4 Os06g0659300_circ_g.6 Os06g0659300_circ_g.7 Os06g0659300_circ_g.8 Os06g0659300_circ_g.9 Os06g0659300_circ_g.10 Os06g0659300_circ_g.11 Os06g0659300_circ_g.12 Os06g0659300_circ_g.13 						
					
						Support reads
						2
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os06t0659300-01:9

General Information
CircRNA Name	Os06g0659300_circ_g.5
ID in PlantcircBase	osa_circ_031836
Alias	Os_ciR10540
Organism	Oryza sativa
Position	chr6: 27138175-27141354 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	find_circ
Parent gene	Os06g0659300
Parent gene annotation	Similar to Actin filament bundling protein P-115-ABP. (Os06t0659 300-01)
Parent gene strand	-
Alternative splicing	Os06g0659300_circ_g.4 Os06g0659300_circ_g.6 Os06g0659300_circ_g.7 Os06g0659300_circ_g.8 Os06g0659300_circ_g.9 Os06g0659300_circ_g.10 Os06g0659300_circ_g.11 Os06g0659300_circ_g.12 Os06g0659300_circ_g.13
Support reads	2
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os06t0659300-01:9

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AATTTCAGATCCACAGTCTAGCAGATAGCACTTTGTTGAATCTAGCAACTCTCTTGTTAGAACA
TCAAAATCAACTGGTACTGTCTGACCCTTATTTAGAcctttgaaaaagtacaagagaacaaatg
aggatcactttcttgatcttttgcaatcttctggctggggtactctgacttgactccaagtagc
ttccaaaa

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CCTTTGAAAAAGTACAAGAGAACAAATGAGGATCACTTTCTTGATCTTTTGCAATCTTCTGGCT
GGGGTACTCTGACTTGACTCCAAGTAGCTTCCAAAACTGATCATATTCTGACCCTTCCTTGAGC
ATTCTGGACTGAAGATTTGGCTGCAGATGAATATATTGGATGAGCATAATGGAAAGGCCAATAT
TATGGTAGTCTCTTTGATAGAGATTAGAGAAGAAAAAGGTCAGAACACAAACATGCTCAGGTCA
AGCATAAACATGTTGTATCTAAAACGCAAACATTACGCTGATATCTAACTTCGGAAGATGCAAT
TAGAAAGCAGATACGTGAGGAATACATGGCATGCTGTAGAATTGTAGATACCGTCACATATGGC
ATATATACAATGCTAGTTAGGAACCTTCAACACCACAAAGATATGGAGATGTAATATTGAACCC
AGAAGATTTATATTATGCTTTATGAAGATGCACAAAGTTTTGTTGAAATATGAAAACTGGCTGT
CTACCAGATAAACCAGAAAATAGAACCACAGTTTGTGAACATATGCGTCATATATATTCATATT
ATTACAAAACTAACAAAGATGCCAACTAGTTATTCATGCACCATGTTCACTGATTACCATGAAC
AGGAAAGCAAGAAAATTAGGAGAAAAAATGATATGTCGATGACCTAACATGACGAAAATAAGTC
CAACAGGATGTATTTACATCAATGCTTCATATTAGAATATTAGTTCCAACAGTAACCACTTCTA
TATGACATGATCATATCGAATAGCATTACTCATACCTTGATCACATCCAGCTGCCTCTCAGCAA
GCTCTTGATCCATTGACGAGCTTAAATTCCCAATCCATGTAAATAGTGTATCTCCATCATGTAG
TACATAACAATAAGAAGAGTTCAGCGAGGTAGCAGCCTGGTAAGAAGAATCATATATAATTATA
TGACGTCATACAGTAGTAGAAGCATAATCCACTAGGATAAAAGTGTTCATAAAATGAGTGTAAT
GCATTTTCAAGTGAAAAAGAAAGTACCGTATCAACTTGAATGGCTTGCATATTTTCTGGTCCAG
AGCCTTGAACCCGGAAAAGGGCAACCCCATTTTCTGAATATGTGTCATCCTCAATACCGTTTTC
TGAGACAAATTTCTTATACCCAGTACTAACACCACCCTGTAAGTATTGAAAAATTAAATGACAC
GGATGCGGCTACTTATTGTCAACAAAGATAGGGCAGTGAAATGATTGCAGAACTTGGTAAAAGG
CAAACCTTGAAGATAACCAGGTTCTGAAATATTGAGAAAAACTCAGCTGGTTCCTTTCCTTCAT
AAAGGCGAACCTGTGATAGACAGTATTGTGATATCGAGATAGTGAACCAAGATTTGCACACATC
TTTCAAATAAAACTAGAAATTTACCATGACTGCCTGAAATTTCAGAGACTCAACCATCTTGCTA
GCAACTGAAATGGCTGTAGTCTTCTCGTCCTGTTTTCAAAAAATGAACCATGAAATTAGATAAT
TCTCCAACTTGAGCAATCAAGATATAGAGTGATTAATCTACCCTCAATTCACAGATAGAATTGA
ATATAACAAGAAATGAACAAATTTCAAGAAACTAGGTACTACCTCATACTCATCAATAGTGACT
GACTGGTGTAGTATGACTAATTTTGAGAATATAAGTATATTCTAAAAAATCTACTGCTCATGTT
CTACATAAGAGAGAAAGATGAGCAAATACATTCCCACTTGTCACTGTGCCAAATGCCTTGTTGG
CATCTCAATAGTTTGATAGTGCACTGCTTTGCACTGCATGAGTTAAGATATCCATTTTAAAAAA
GAACATAGTACAAACAGCTGCTCAACAGCTCAAATGCTTTGCCTTTTAGATGGGAGAACAAGTT
GGGGTTGCAAGTCATACTTCACTAATTCACCTTAATCAGTCATCAATACATGCATGACTGTTAT
GGATTACCATCAGCGTTTAAAATCACTACAATGGATGGGAAATACATCCAAATGTTACCTGAAC
ACTCTTTTTCCCGAACCAAGTACCAATGAGACACTCCTCGCCTTCCTCACCAGGATAGCTATAT
TGAAAGATATAACAGTCCCCACTGTAGAATTTGCATTGCTCAGAGAATGAAAGGAATGTCTTTT
CAGTGCCATTTACACGCCAAACCTACAAGATACAGCCATTAAATTTTTAGCAGCATATTGTTCC
ATGTATATTTGTTATTTACAGAAGAGTTCAACAAAAGAAAATGCAACAATTTATAGATAAATGT
GATGTCACTAAAAATCTTAAGCACTAAAAATCTTAAGCAAGGAAAAAAGTTTGCAGACCTGCAG
GTTGCCTGTGCAATCAATTTGAGGTTGAGGCTCTTCCTTCACAGGAGCAGCTTTTGCAAGACCC
TTAACATTAAATCCTTGCCGCTTAAGAAGAGCTACAGAGAGAGAAAAAATATTTACCAACATAT
TTCAGTACTGAAAGAAAATAAACAAGGATGATCTGTGATATATGCTAACCTGCAACTTTTCCTC
TGCTCTCATCAGACACAACAGCATCAGCTTTCTTAGGCCATTTACTGAATTTTGATCGGAATAT
GACAGTCTCAAATCCTTCCATGAGACGAACAATATGAGATTTTGGCCTGTTTACTTCACGAAGT
AATTCCTGCATAAATGACAGTGAGAATTTCTGCATCTTCAAGGAGAGAGAAAGAGCGAGAGAAA
GATATAGAGAGAAAGAAGTCAAAAAAAAGAGAATTTAGAATGCCAGGTTTCCATATTATTATGA
TGATAGATAACTAAATTAGGATTAATAATATGCAACACTGGAGATACCATCCTAATTTGTGGAG
AGAGACGATCTGGCTATGAACTAAACAGAGGCTAGATCACCCAATCATGGTACTGCATGTCATT
AATTTGAGCGGTTAAATTATGACAAGCCATCCAATGAACTTAAAGTCAGAAATCAGAGAGAAGA
TAATGTTACCTCTGCAGCAGATCCTGCCCGTTTCCTCTCTTCGAGTGGTGTCTCTCTACCCATC
CAGACATAAATTTCAGATCCACAGTCTAGCAGATAGCACTTTGTTGAATCTAGCAACTCTCTTG
TTAGAACATCAAAATCAACTGGTACTGTCTGACCCTTATTTAGA
						
					

			
		

Sequences
Splice junction sequence	AATTTCAGATCCACAGTCTAGCAGATAGCACTTTGTTGAATCTAGCAACTCTCTTGTTAGAACA TCAAAATCAACTGGTACTGTCTGACCCTTATTTAGAcctttgaaaaagtacaagagaacaaatg aggatcactttcttgatcttttgcaatcttctggctggggtactctgacttgactccaagtagc ttccaaaa
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CCTTTGAAAAAGTACAAGAGAACAAATGAGGATCACTTTCTTGATCTTTTGCAATCTTCTGGCT GGGGTACTCTGACTTGACTCCAAGTAGCTTCCAAAACTGATCATATTCTGACCCTTCCTTGAGC ATTCTGGACTGAAGATTTGGCTGCAGATGAATATATTGGATGAGCATAATGGAAAGGCCAATAT TATGGTAGTCTCTTTGATAGAGATTAGAGAAGAAAAAGGTCAGAACACAAACATGCTCAGGTCA AGCATAAACATGTTGTATCTAAAACGCAAACATTACGCTGATATCTAACTTCGGAAGATGCAAT TAGAAAGCAGATACGTGAGGAATACATGGCATGCTGTAGAATTGTAGATACCGTCACATATGGC ATATATACAATGCTAGTTAGGAACCTTCAACACCACAAAGATATGGAGATGTAATATTGAACCC AGAAGATTTATATTATGCTTTATGAAGATGCACAAAGTTTTGTTGAAATATGAAAACTGGCTGT CTACCAGATAAACCAGAAAATAGAACCACAGTTTGTGAACATATGCGTCATATATATTCATATT ATTACAAAACTAACAAAGATGCCAACTAGTTATTCATGCACCATGTTCACTGATTACCATGAAC AGGAAAGCAAGAAAATTAGGAGAAAAAATGATATGTCGATGACCTAACATGACGAAAATAAGTC CAACAGGATGTATTTACATCAATGCTTCATATTAGAATATTAGTTCCAACAGTAACCACTTCTA TATGACATGATCATATCGAATAGCATTACTCATACCTTGATCACATCCAGCTGCCTCTCAGCAA GCTCTTGATCCATTGACGAGCTTAAATTCCCAATCCATGTAAATAGTGTATCTCCATCATGTAG TACATAACAATAAGAAGAGTTCAGCGAGGTAGCAGCCTGGTAAGAAGAATCATATATAATTATA TGACGTCATACAGTAGTAGAAGCATAATCCACTAGGATAAAAGTGTTCATAAAATGAGTGTAAT GCATTTTCAAGTGAAAAAGAAAGTACCGTATCAACTTGAATGGCTTGCATATTTTCTGGTCCAG AGCCTTGAACCCGGAAAAGGGCAACCCCATTTTCTGAATATGTGTCATCCTCAATACCGTTTTC TGAGACAAATTTCTTATACCCAGTACTAACACCACCCTGTAAGTATTGAAAAATTAAATGACAC GGATGCGGCTACTTATTGTCAACAAAGATAGGGCAGTGAAATGATTGCAGAACTTGGTAAAAGG CAAACCTTGAAGATAACCAGGTTCTGAAATATTGAGAAAAACTCAGCTGGTTCCTTTCCTTCAT AAAGGCGAACCTGTGATAGACAGTATTGTGATATCGAGATAGTGAACCAAGATTTGCACACATC TTTCAAATAAAACTAGAAATTTACCATGACTGCCTGAAATTTCAGAGACTCAACCATCTTGCTA GCAACTGAAATGGCTGTAGTCTTCTCGTCCTGTTTTCAAAAAATGAACCATGAAATTAGATAAT TCTCCAACTTGAGCAATCAAGATATAGAGTGATTAATCTACCCTCAATTCACAGATAGAATTGA ATATAACAAGAAATGAACAAATTTCAAGAAACTAGGTACTACCTCATACTCATCAATAGTGACT GACTGGTGTAGTATGACTAATTTTGAGAATATAAGTATATTCTAAAAAATCTACTGCTCATGTT CTACATAAGAGAGAAAGATGAGCAAATACATTCCCACTTGTCACTGTGCCAAATGCCTTGTTGG CATCTCAATAGTTTGATAGTGCACTGCTTTGCACTGCATGAGTTAAGATATCCATTTTAAAAAA GAACATAGTACAAACAGCTGCTCAACAGCTCAAATGCTTTGCCTTTTAGATGGGAGAACAAGTT GGGGTTGCAAGTCATACTTCACTAATTCACCTTAATCAGTCATCAATACATGCATGACTGTTAT GGATTACCATCAGCGTTTAAAATCACTACAATGGATGGGAAATACATCCAAATGTTACCTGAAC ACTCTTTTTCCCGAACCAAGTACCAATGAGACACTCCTCGCCTTCCTCACCAGGATAGCTATAT TGAAAGATATAACAGTCCCCACTGTAGAATTTGCATTGCTCAGAGAATGAAAGGAATGTCTTTT CAGTGCCATTTACACGCCAAACCTACAAGATACAGCCATTAAATTTTTAGCAGCATATTGTTCC ATGTATATTTGTTATTTACAGAAGAGTTCAACAAAAGAAAATGCAACAATTTATAGATAAATGT GATGTCACTAAAAATCTTAAGCACTAAAAATCTTAAGCAAGGAAAAAAGTTTGCAGACCTGCAG GTTGCCTGTGCAATCAATTTGAGGTTGAGGCTCTTCCTTCACAGGAGCAGCTTTTGCAAGACCC TTAACATTAAATCCTTGCCGCTTAAGAAGAGCTACAGAGAGAGAAAAAATATTTACCAACATAT TTCAGTACTGAAAGAAAATAAACAAGGATGATCTGTGATATATGCTAACCTGCAACTTTTCCTC TGCTCTCATCAGACACAACAGCATCAGCTTTCTTAGGCCATTTACTGAATTTTGATCGGAATAT GACAGTCTCAAATCCTTCCATGAGACGAACAATATGAGATTTTGGCCTGTTTACTTCACGAAGT AATTCCTGCATAAATGACAGTGAGAATTTCTGCATCTTCAAGGAGAGAGAAAGAGCGAGAGAAA GATATAGAGAGAAAGAAGTCAAAAAAAAGAGAATTTAGAATGCCAGGTTTCCATATTATTATGA TGATAGATAACTAAATTAGGATTAATAATATGCAACACTGGAGATACCATCCTAATTTGTGGAG AGAGACGATCTGGCTATGAACTAAACAGAGGCTAGATCACCCAATCATGGTACTGCATGTCATT AATTTGAGCGGTTAAATTATGACAAGCCATCCAATGAACTTAAAGTCAGAAATCAGAGAGAAGA TAATGTTACCTCTGCAGCAGATCCTGCCCGTTTCCTCTCTTCGAGTGGTGTCTCTCTACCCATC CAGACATAAATTTCAGATCCACAGTCTAGCAGATAGCACTTTGTTGAATCTAGCAACTCTCTTG TTAGAACATCAAAATCAACTGGTACTGTCTGACCCTTATTTAGA

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.113746847

Conservation Information
Conserved circRNAs	NA
PMCS	0.113746847

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							27141247-27141352(-)
27138284-27141348(-)
						
						Potential amino acid sequence
						
							MGRETPLEERKRAGSAAEELLREVNRPKSHIVRLMEGFETVIFRSKFSKWPKKADAVVSDESRG
KVAALLKRQGFNVKGLAKAAPVKEEPQPQIDCTGNLQVWRVNGTEKTFLSFSEQCKFYSGDCYI
FQYSYPGEEGEECLIGTWFGKKSVQDEKTTAISVASKMVESLKFQAVMVRLYEGKEPAEFFSIF
QNLVIFKGGVSTGYKKFVSENGIEDDTYSENGVALFRVQGSGPENMQAIQVDTAATSLNSSYCY
VLHDGDTLFTWIGNLSSSMDQELAERQLDVIKPNLQSRMLKEGSEYDQFWKLLGVKSEYPSQKI
AKDQESDPHLFSCTFSKV*(-)
MISFGSYLESSQSTPARRLQKIKKVILICSLVLFQRSK*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	27141247-27141352(-) 27138284-27141348(-)
Potential amino acid sequence	MGRETPLEERKRAGSAAEELLREVNRPKSHIVRLMEGFETVIFRSKFSKWPKKADAVVSDESRG KVAALLKRQGFNVKGLAKAAPVKEEPQPQIDCTGNLQVWRVNGTEKTFLSFSEQCKFYSGDCYI FQYSYPGEEGEECLIGTWFGKKSVQDEKTTAISVASKMVESLKFQAVMVRLYEGKEPAEFFSIF QNLVIFKGGVSTGYKKFVSENGIEDDTYSENGVALFRVQGSGPENMQAIQVDTAATSLNSSYCY VLHDGDTLFTWIGNLSSSMDQELAERQLDVIKPNLQSRMLKEGSEYDQFWKLLGVKSEYPSQKI AKDQESDPHLFSCTFSKV(-) MISFGSYLESSQSTPARRLQKIKKVILICSLVLFQRSK(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015

circRNA

Detail information of Os06g0659300_circ_g.5

Address

Any questions?

Supported by