Detail information of Os10g0476600_circ_g.5


General Information
CircRNA Name Os10g0476600_circ_g.5
ID in PlantcircBase osa_circ_007100
Alias NA
Organism Oryza sativa
Position chr10: 17758710-17761482  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os10g0476600
Parent gene annotation Similar to Protein phosphatase 2A 62 kDa B'' regulatory subunit
(Protein phosphatase 2A 62 kDa B regulatory subunit) (Protein ph
osphatase 2A alpha). (Os10t0476600-01);Similar to Protein phosph
atase 2A 62 kDa B'' regulatory subunit (Protein phosphatase 2A 6
2 kDa B regulatory subunit) (Protein phosphatase 2A alpha). (Os1
0t0476600-02)
Parent gene strand +
Alternative splicing Os10g0476600_circ_g.1 Os10g0476600_circ_g.2 Os10g0476600_circ_g.3 Os10g0476600_circ_g.4 Os10g0476600_circ_g.6 Os10g0476600_circ_g.7 Os10g0476600_circ_g.8 Os10g0476600_circ_g.9 Os10g0476600_circ_g.10 Os10g0476600_circ_g.11 Os10g0476600_circ_g.12 Os10g0476600_circ_g.13 Os10g0476600_circ_g.14 Os10g0476600_circ_g.15
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os10t0476600-01:7
Os10t0476600-02:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTGGACACAGATCATGATTTTTTGATTGATAAAGAGAACCTTATCAGATATGGAAATCATTCA
TTAACCTACCGAATCGTTGATAGAATCTTCTCACAGgtgaactctttgattgaagatgcaaaag
ctggtgctacattgaatgttactgggagctctgctagcacaaatgctgcttcaagtggttcttt
gccatcaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGAACTCTTTGATTGAAGATGCAAAAGCTGGTGCTACATTGAATGTTACTGGGAGCTCTGCTA
GCACAAATGCTGCTTCAAGTGGTTCTTTGCCATCAATGTTTCCGGCTGGTAGTGCTCCTCCCCT
TTCTCCTAGAAGCACTTCTGGCTCCCCCCGTGTTATGAGGCGAGGATCTGGAGCTGGACCATCA
TCCTTGGGATCTCCACTAAAAGTAGTTAGTGAACCAGTGAGGGAGGTTATACCCCAGGTACTTC
TTATCTATTTTTGCAGTTAGTATTATTGTTGCGTTATTTCTGTTTGTCATCATTCGACCATATA
TTTATTTCTAATACTTCTTTGCATGCTATATGTTTTCAGTTTTACTTCAAATATGGGCGCCCTG
CTCCAAAAGATTTGAAGGAGCAATGCTTATCTAGAATAGATCACCTCTTTTTTGCAGGGGAGGG
ACTCCAGATTCAAGGTGATTGCTTTGAGGATTTCATTTCTTGATTTTACGCATTAAAAATACAT
TTCTAAGTTTGAATATTATATTTCTCCATATCAGAATTTAGATCAGTCACAAAAGATATATGCA
AACTTCCATCGTTCTTCTCCAGTGTTCTTTTCAAGAAGATCGATGCTGCAGGCTCTGGAACTGT
CACAAGGTATATTGTTCATTTCAATATCTGTGTCGATGCAATATAATGGCATCATTGGCATGTG
CTAGAAGTTTATGGACCTTAGCTGTTAATCTGTTATCATGTTTGGAAGACACGATCAATATTTT
GTAGATGGACTGTTATGTTATAGCATAATTGTTCATTCCACAGGCTGTTCAAATTCTATACACT
GCTTCATGGTGAAGCAATATCTGTGTTGATTTTGTTCTATTTACGTGGTTCTTTGTACTTGGAA
CTCAATCTGTTATACCTAGAAGTAAGGTATTCTTGGTTGGATCCTTCATTGCACAATTGGCTTT
CTGAATCTGTTAGCTCGTGCTACTTTTCACTTGTCCTGGCTTTTGCCAGGAAATACAACATTCC
AGACTATTTTAAGATATTATAAATACCAGTTTTGATAACCATCCTTATGTGTTATTCTATGGGC
ATGATATTTGATCCTTCATTAGTAACTCTTAATTTTTATGCCACTAGAATGTGCTTTGGCACCA
TGTGTTTCTTATGTACCTCATTATATTTGCTTTGTAATTGTTTTTGTAACTGGACTAGATTATC
ATATACCCTTAGCTTTAACGGTTGAATTTATTGATAACTACACATGAAGTGTTTCATATGTATT
ATTAAACAAATTTTGAACAATTTCATTTGTTTTTCTGGCTCATGCAGTCTAGCGGTGTTATGAT
AACTAGAGTTCTGATGTAAAATATCCCAGTTCACAAGTTTATCTCAGCCCCACTGCGCTGTTGA
AGTCCTGAAACTTGAATTTAAGTGTACTTCCCATACATGTAGATGATTCCCCTTTGATGCATGT
AGATGATTCCCCTTTGATCTTCATACTAAAATCTAATGTTTTCAGATTTGACATGGGTAAAGTA
TGAATTTATTTATATATTCAGGGATGCGTTTGTTGATTACTGGATCAATGATAACAAGATTACA
ATGGACACAGCTAGCCAAATCTTTGAAATATTAAGAAAGCCGGATTACAATTATCTCACTCAGG
TATGTAATTCTTGTGCTGGTTCTTTGTACCCTCACACCAGTATATTCGACTACAATTGGCAAAG
ATGTTCTTATATGTTGCTCATTTTCTTTGATGGGATCACTAGTTTGTAATTTCATTGATTTTGT
GTAATTCCCACAGGAGGACTTTAAGCCTGTCTTAAAAGAACTTCTGGCAACTCACCCTGGATTA
GAGTTCTTGCAAGGCACCCCTGAGTTTCAGGAGAGATATGGTACTTTCTGCCATCCAGTAGCAA
TGTTGTTGTGTATCTCTCGTTCATTTTGGTGACAATCAAAATACTGATTTTCTTCTCATATAGT
GATGTATGACACTGAATTTTTTTAGTAGTGTATGGTGAATGTTGATATGTAAAAATATAGGCAT
GTGTGTGTTCTAACTAGAGATTGCCATAGTAAAAAACAACTAGCTATTGATTATTTTATGAGGA
TTCTACGATTGGACCTGGTCAATGACTATTGGTAGTGATTTGCTGGATGCCTGCATCTCATTCA
TCTGCTAATCGTTTATTATGTAATTTTCAGCTGAGACTGTAATATACAGAATCTTTTATTCCAT
AAATAGAGCTGGAAATGGCCATCTTACCCTCAGAGAGCTAAAACGTGGGAATTTAATTGCTGCG
ATGCAGCAGCTGGATGAGGAAGAGGATATCAATAAAGTGTTGAGGTAATTAACATATTTGATTG
TTAATGTATCTGCGATATCCATTCTTGCATGCATTTGCAATATATCTTAGCAGAATGGTGGCAC
TGATTATAATAATATTAATAATTGTGATTTAATTCCTTACATGTATTTTTGTTGTTACCTGTAA
TAATCTATTACTGGGTCCTGGGGATCCTCACGAATTACTTGGATTCAAGTTATATTATTTATGT
GCGAATCAAACAAGATTTTTTACATTTTTTTTCCAAATGTGTTAATTTTCTGATGCCTAATGCA
GATACTTCTCATACGAGCACTTTTATGTGATATACTGCAAATTTTGGGAGTTGGACACAGATCA
TGATTTTTTGATTGATAAAGAGAACCTTATCAGATATGGAAATCATTCATTAACCTACCGAATC
GTTGATAGAATCTTCTCACAG
Conservation Information
Conserved circRNAs NA
PMCS 0.134230073
Functional Information
Coding potential Y
Potential coding position 17758810-17761479(+)
Potential amino acid sequence MFPAGSAPPLSPRSTSGSPRVMRRGSGAGPSSLGSPLKVVSEPVREVIPQFYFKYGRPAPKDLK
EQCLSRIDHLFFAGEGLQIQEFRSVTKDICKLPSFFSSVLFKKIDAAGSGTVTRDAFVDYWIND
NKITMDTASQIFEILRKPDYNYLTQEDFKPVLKELLATHPGLEFLQGTPEFQERYAETVIYRIF
YSINRAGNGHLTLRELKRGNLIAAMQQLDEEEDINKVLRYFSYEHFYVIYCKFWELDTDHDFLI
DKENLIRYGNHSLTYRIVDRIFSQVNSLIEDAKAGATLNVTGSSASTNAASSGSLPSMFPAGSA
PPLSPRSTSGSPRVMRRGSGAGPSSLGSPLKVVSEPVREVIPQFYFKYGRPAPKDLKEQCLSRI
DHLFFAGEGLQIQEFRSVTKDICKLPSFFSSVLFKKIDAAGSGTVTRDAFVDYWINDNKITMDT
ASQIFEILRKPDYNYLTQEDFKPVLKELLATHPGLEFLQGTPEFQERYAETVIYRIFYSINRAG
NGHLTLRELKRGNLIAAMQQLDEEEDINKVLRYFSYEHFYVIYCKFWELDTDHDFLIDKENLIR
YGNHSLTYRIVDRIFSQVNSLIEDAKAGATLNVTGSSASTNAASSGSLPSMFPAGSAPPLSPRS
TSGSPRVMRRGSGAGPSSLGSPLKVVSEPVREVIPQFYFKYGRPAPKDLKEQCLSRIDHLFFAG
EGLQIQEFRSVTKDICKLPSFFSSVLFKKIDAAGSGTVTRDAFVDYWINDNKITMDTASQIFEI
LRKPDYNYLTQEDFKPVLKELLATHPGLEFLQGTPEFQERYAETVIYRIFYSINRAGNGHLTLR
ELKRGNLIAAMQQLDEEEDINKVLRYFSYEHFYVIYCKFWELDTDHDFLIDKENLIRYGNHSLT
YRIVDRIFSQVNSLIEDAKAGATLNVTGSSASTNAASSGSLPSMFPAGSAPPLSPRSTSGSPRV
MRRGSGAGPSSLGSPLKVVSEPVREVIPQFYFKYGRPAPKDLKEQCLSRIDHLFFAGEGLQIQE
FRSVTKDICKLPSFFSSVLFKKIDAAGSGTVTRDAFVDYWINDNKITMDTASQIFEILRKPDYN
YLTQEDFKPVLKELLATHPGLEFLQGTPEFQERYAETVIYRIFYSINRAGNGHLTLRELKRGNL
IAAMQQLDEEEDINKVLRYFSYEHFYVIYCKFWELDTDHDFLIDKENLIRYGNHSLTYRIVDRI
FSQ(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017