Detail information of Os10g0476600_circ_g.7


General Information
CircRNA Name Os10g0476600_circ_g.7
ID in PlantcircBase osa_circ_007102
Alias NA
Organism Oryza sativa
Position chr10: 17758710-17762756  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os10g0476600
Parent gene annotation Similar to Protein phosphatase 2A 62 kDa B'' regulatory subunit
(Protein phosphatase 2A 62 kDa B regulatory subunit) (Protein ph
osphatase 2A alpha). (Os10t0476600-01);Similar to Protein phosph
atase 2A 62 kDa B'' regulatory subunit (Protein phosphatase 2A 6
2 kDa B regulatory subunit) (Protein phosphatase 2A alpha). (Os1
0t0476600-02)
Parent gene strand +
Alternative splicing Os10g0476600_circ_g.1 Os10g0476600_circ_g.2 Os10g0476600_circ_g.3 Os10g0476600_circ_g.4 Os10g0476600_circ_g.5 Os10g0476600_circ_g.6 Os10g0476600_circ_g.8 Os10g0476600_circ_g.9 Os10g0476600_circ_g.10 Os10g0476600_circ_g.11 Os10g0476600_circ_g.12 Os10g0476600_circ_g.13 Os10g0476600_circ_g.14 Os10g0476600_circ_g.15
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os10t0476600-01:11
Os10t0476600-02:11
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGAGTATATTAGATTGTCCATGGAAGAAGATGGTGAAGATGCTTCAAATGGAAGTGGTGATGT
GTGGGATGAATCGCTTGAAGCTCCATTTTGAAATATgtgaactctttgattgaagatgcaaaag
ctggtgctacattgaatgttactgggagctctgctagcacaaatgctgcttcaagtggttcttt
gccatcaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1478
Transcript exons: 17758710-17758958,17759069-17759171,17759256-17759355,17
760267-17760372,17760515-17760605,17760916-17761057,1776
1335-17761482,17761562-17761671,17762096-17762252,177624
04-17762529,17762611-17762756
GTGAACTCTTTGATTGAAGATGCAAAAGCTGGTGCTACATTGAATGTTACTGGGAGCTCTGCTA
GCACAAATGCTGCTTCAAGTGGTTCTTTGCCATCAATGTTTCCGGCTGGTAGTGCTCCTCCCCT
TTCTCCTAGAAGCACTTCTGGCTCCCCCCGTGTTATGAGGCGAGGATCTGGAGCTGGACCATCA
TCCTTGGGATCTCCACTAAAAGTAGTTAGTGAACCAGTGAGGGAGGTTATACCCCAGTTTTACT
TCAAATATGGGCGCCCTGCTCCAAAAGATTTGAAGGAGCAATGCTTATCTAGAATAGATCACCT
CTTTTTTGCAGGGGAGGGACTCCAGATTCAAGAATTTAGATCAGTCACAAAAGATATATGCAAA
CTTCCATCGTTCTTCTCCAGTGTTCTTTTCAAGAAGATCGATGCTGCAGGCTCTGGAACTGTCA
CAAGGGATGCGTTTGTTGATTACTGGATCAATGATAACAAGATTACAATGGACACAGCTAGCCA
AATCTTTGAAATATTAAGAAAGCCGGATTACAATTATCTCACTCAGGAGGACTTTAAGCCTGTC
TTAAAAGAACTTCTGGCAACTCACCCTGGATTAGAGTTCTTGCAAGGCACCCCTGAGTTTCAGG
AGAGATATGCTGAGACTGTAATATACAGAATCTTTTATTCCATAAATAGAGCTGGAAATGGCCA
TCTTACCCTCAGAGAGCTAAAACGTGGGAATTTAATTGCTGCGATGCAGCAGCTGGATGAGGAA
GAGGATATCAATAAAGTGTTGAGATACTTCTCATACGAGCACTTTTATGTGATATACTGCAAAT
TTTGGGAGTTGGACACAGATCATGATTTTTTGATTGATAAAGAGAACCTTATCAGATATGGAAA
TCATTCATTAACCTACCGAATCGTTGATAGAATCTTCTCACAGGTCCCAAGAAAATTCACAAGC
ATGACAGAAGGAAAGATGGGTTATGAAGATTTTGTTTACTTTATTTTGTCTGAGGAAGACAAAT
CATCCGAGCCTAGCCTTGAATACTGGTTTAAGTGTATTGACCTTGATGGAAATGGCATTTTAAC
CACCACTGAAATGCAATTTTTCTATGAGGAGCAATTGCACCGGATGGAGTGCATGGCACAAGAA
CCTGTGCTTTTTGAGGACATATTATGCCAGATGATTGATATGATTGGACCAGAGAACGAGTGCT
ACTTTACACTACGGGACTTAAAACGGTGTAAACTCTCAGGGAATATATTCAACATCCTATTCAA
TCTCAACAAATTTATGGCATTTGAAACTCGTGATCCATTCCTCATTCGCCAGGAACGTGAAAAT
CCAACTTTAACCGAGTGGGATCGGTTCGCACATAGAGAGTATATTAGATTGTCCATGGAAGAAG
ATGGTGAAGATGCTTCAAATGGAAGTGGTGATGTGTGGGATGAATCGCTTGAAGCTCCATTTTG
AAATAT

Genomic sequence GTGAACTCTTTGATTGAAGATGCAAAAGCTGGTGCTACATTGAATGTTACTGGGAGCTCTGCTA
GCACAAATGCTGCTTCAAGTGGTTCTTTGCCATCAATGTTTCCGGCTGGTAGTGCTCCTCCCCT
TTCTCCTAGAAGCACTTCTGGCTCCCCCCGTGTTATGAGGCGAGGATCTGGAGCTGGACCATCA
TCCTTGGGATCTCCACTAAAAGTAGTTAGTGAACCAGTGAGGGAGGTTATACCCCAGGTACTTC
TTATCTATTTTTGCAGTTAGTATTATTGTTGCGTTATTTCTGTTTGTCATCATTCGACCATATA
TTTATTTCTAATACTTCTTTGCATGCTATATGTTTTCAGTTTTACTTCAAATATGGGCGCCCTG
CTCCAAAAGATTTGAAGGAGCAATGCTTATCTAGAATAGATCACCTCTTTTTTGCAGGGGAGGG
ACTCCAGATTCAAGGTGATTGCTTTGAGGATTTCATTTCTTGATTTTACGCATTAAAAATACAT
TTCTAAGTTTGAATATTATATTTCTCCATATCAGAATTTAGATCAGTCACAAAAGATATATGCA
AACTTCCATCGTTCTTCTCCAGTGTTCTTTTCAAGAAGATCGATGCTGCAGGCTCTGGAACTGT
CACAAGGTATATTGTTCATTTCAATATCTGTGTCGATGCAATATAATGGCATCATTGGCATGTG
CTAGAAGTTTATGGACCTTAGCTGTTAATCTGTTATCATGTTTGGAAGACACGATCAATATTTT
GTAGATGGACTGTTATGTTATAGCATAATTGTTCATTCCACAGGCTGTTCAAATTCTATACACT
GCTTCATGGTGAAGCAATATCTGTGTTGATTTTGTTCTATTTACGTGGTTCTTTGTACTTGGAA
CTCAATCTGTTATACCTAGAAGTAAGGTATTCTTGGTTGGATCCTTCATTGCACAATTGGCTTT
CTGAATCTGTTAGCTCGTGCTACTTTTCACTTGTCCTGGCTTTTGCCAGGAAATACAACATTCC
AGACTATTTTAAGATATTATAAATACCAGTTTTGATAACCATCCTTATGTGTTATTCTATGGGC
ATGATATTTGATCCTTCATTAGTAACTCTTAATTTTTATGCCACTAGAATGTGCTTTGGCACCA
TGTGTTTCTTATGTACCTCATTATATTTGCTTTGTAATTGTTTTTGTAACTGGACTAGATTATC
ATATACCCTTAGCTTTAACGGTTGAATTTATTGATAACTACACATGAAGTGTTTCATATGTATT
ATTAAACAAATTTTGAACAATTTCATTTGTTTTTCTGGCTCATGCAGTCTAGCGGTGTTATGAT
AACTAGAGTTCTGATGTAAAATATCCCAGTTCACAAGTTTATCTCAGCCCCACTGCGCTGTTGA
AGTCCTGAAACTTGAATTTAAGTGTACTTCCCATACATGTAGATGATTCCCCTTTGATGCATGT
AGATGATTCCCCTTTGATCTTCATACTAAAATCTAATGTTTTCAGATTTGACATGGGTAAAGTA
TGAATTTATTTATATATTCAGGGATGCGTTTGTTGATTACTGGATCAATGATAACAAGATTACA
ATGGACACAGCTAGCCAAATCTTTGAAATATTAAGAAAGCCGGATTACAATTATCTCACTCAGG
TATGTAATTCTTGTGCTGGTTCTTTGTACCCTCACACCAGTATATTCGACTACAATTGGCAAAG
ATGTTCTTATATGTTGCTCATTTTCTTTGATGGGATCACTAGTTTGTAATTTCATTGATTTTGT
GTAATTCCCACAGGAGGACTTTAAGCCTGTCTTAAAAGAACTTCTGGCAACTCACCCTGGATTA
GAGTTCTTGCAAGGCACCCCTGAGTTTCAGGAGAGATATGGTACTTTCTGCCATCCAGTAGCAA
TGTTGTTGTGTATCTCTCGTTCATTTTGGTGACAATCAAAATACTGATTTTCTTCTCATATAGT
GATGTATGACACTGAATTTTTTTAGTAGTGTATGGTGAATGTTGATATGTAAAAATATAGGCAT
GTGTGTGTTCTAACTAGAGATTGCCATAGTAAAAAACAACTAGCTATTGATTATTTTATGAGGA
TTCTACGATTGGACCTGGTCAATGACTATTGGTAGTGATTTGCTGGATGCCTGCATCTCATTCA
TCTGCTAATCGTTTATTATGTAATTTTCAGCTGAGACTGTAATATACAGAATCTTTTATTCCAT
AAATAGAGCTGGAAATGGCCATCTTACCCTCAGAGAGCTAAAACGTGGGAATTTAATTGCTGCG
ATGCAGCAGCTGGATGAGGAAGAGGATATCAATAAAGTGTTGAGGTAATTAACATATTTGATTG
TTAATGTATCTGCGATATCCATTCTTGCATGCATTTGCAATATATCTTAGCAGAATGGTGGCAC
TGATTATAATAATATTAATAATTGTGATTTAATTCCTTACATGTATTTTTGTTGTTACCTGTAA
TAATCTATTACTGGGTCCTGGGGATCCTCACGAATTACTTGGATTCAAGTTATATTATTTATGT
GCGAATCAAACAAGATTTTTTACATTTTTTTTCCAAATGTGTTAATTTTCTGATGCCTAATGCA
GATACTTCTCATACGAGCACTTTTATGTGATATACTGCAAATTTTGGGAGTTGGACACAGATCA
TGATTTTTTGATTGATAAAGAGAACCTTATCAGATATGGAAATCATTCATTAACCTACCGAATC
GTTGATAGAATCTTCTCACAGGTTAGTATGTTCTATTCTGCATACAGAACTGAGATGCTGCCTT
AGTTGGCCTAAATGTTGTTTCCTATATGTTACTTAGGTCCCAAGAAAATTCACAAGCATGACAG
AAGGAAAGATGGGTTATGAAGATTTTGTTTACTTTATTTTGTCTGAGGAAGACAAATCATCCGA
GCCTAGCCTTGAATACTGGTAAGTATGTTCTATTAGCGTAGATAATTGTCCTTGGTAGGCACTC
GTAGTTTTTATCTTCTATATGCATTTGTATATTCTGTCTCACTTAGCTTGATTAAGCTATCACT
ATCACTGTTTAATTTCGAGTGCAAATGTGTGGTGGAACCAGCTATTGTCCTGTTTTATGTCCAG
GCATTGAAGACTACAGTGAACTCAAAGATTTTTATTTTTACAGCACACTTTGTTTTGCAGAATT
TTAAGTAACAAACAAATTTCCAAATAAGATATTTTTGGATACAACTTATGCATCTACTTTTAAC
TGGTATGGGGCTAGCAAGGAGCTTGCCTATTGAGTTTTGCCTTACAGTGGCTTTAATATTGTAG
TATATTTTACAACTAATTATGTTACTGTATTCATTGAACATATGAACCAATTTTACAGGTTTAA
GTGTATTGACCTTGATGGAAATGGCATTTTAACCACCACTGAAATGCAATTTTTCTATGAGGAG
CAATTGCACCGGATGGAGTGCATGGCACAAGAACCTGTGCTTTTTGAGGACATATTATGCCAGA
TGATTGATATGATTGGACCAGAGGTAGCATCTTGGACAGAATTATTGATGCATTTTAGGCCTGT
TTGGAACAGTGGAATGTCAGCATGTTGAGGAATTGCACCATTTAATGCAAAATTCCTGTGTTCC
AAACAAGTCCTTAAACTGAATTTGATAAATCTTTTCTTTTCCACAGAACGAGTGCTACTTTACA
CTACGGGACTTAAAACGGTGTAAACTCTCAGGGAATATATTCAACATCCTATTCAATCTCAACA
AATTTATGGCATTTGAAACTCGTGATCCATTCCTCATTCGCCAGGTGATCACAACTTCTTGCCA
TAAAGCAGTGAATTCACTGTTAATCATCTAAATAACAAGTTGGATCATCTTTTTATTTCAGGAA
CGTGAAAATCCAACTTTAACCGAGTGGGATCGGTTCGCACATAGAGAGTATATTAGATTGTCCA
TGGAAGAAGATGGTGAAGATGCTTCAAATGGAAGTGGTGATGTGTGGGATGAATCGCTTGAAGC
TCCATTTTGAAATAT
Conservation Information
Conserved circRNAs osi_circ_008510
PMCS 0.243002384
Functional Information
Coding potential Y
Potential coding position 17762688-17758723(+)
Potential amino acid sequence MVKMLQMEVVMCGMNRLKLHFEICELFD*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017