Plant Circular RNA Database

Detail information of 1_circ_ig.26

			
						 General Information
					
						CircRNA Name
						1_circ_ig.26
					
						ID in PlantcircBase
						ath_circ_005586
					
						Alias
						1:12197021-12199163
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr1: 12197021-12199163  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ig-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							AT1G33615_circ_g.1 1_circ_igg.2 AT1G33615_circ_g.3 AT1G33615_circ_g.4 AT1G33615_circ_g.5 AT1G33615_circ_g.6 AT1G33615_circ_g.7 AT1G33615_circ_g.8 AT1G33615_circ_g.9 AT1G33615_circ_g.10 AT1G33615_circ_g.11 1_circ_igg.12 1_circ_ag.13 AT1G33615_circ_g.14 AT1G33615_circ_g.15 AT1G33615_circ_g.16 1_circ_igg.17 AT1G33615_circ_g.18 1_circ_igg.19 1_circ_igg.20 1_circ_ig.21 1_circ_ig.22 1_circ_ig.23 1_circ_ig.24 1_circ_ig.25 1_circ_ig.27 1_circ_ig.28 1_circ_ig.29 1_circ_igg.30 AT1G33680_circ_g.1 AT1G33680_circ_g.2 AT1G33680_circ_g.3 AT1G33680_circ_g.4 AT1G33680_circ_g.5 AT1G33680_circ_g.6 AT1G33680_circ_g.7 AT1G33680_circ_g.8 AT1G33680_circ_g.9 AT1G33700_circ_g.1 AT1G33700_circ_g.2 AT1G33700_circ_g.3 AT1G33700_circ_g.4 AT1G33700_circ_g.5 AT1G33790_circ_g.1 AT1G33810_circ_g.1 AT1G33930_circ_g.1 AT1G33960_circ_g.1 AT1G33970_circ_g.1 AT1G33970_circ_g.2 AT1G33970_circ_g.3 AT1G33970_circ_g.4 AT1G33970_circ_g.5 AT1G33980_circ_g.1 AT1G33980_circ_g.2 AT1G33980_circ_g.3 AT1G33980_circ_g.4 AT1G33980_circ_g.5 AT1G33980_circ_g.6 AT1G33980_circ_g.7 AT1G33980_circ_g.8 AT1G33980_circ_g.9 AT1G33990_circ_g.1 AT1G33990_circ_g.2 AT1G34020_circ_g.1 AT1G34020_circ_g.2 AT1G34020_circ_g.3 1_circ_ig.4 1_circ_ig.5 1_circ_ig.6 1_circ_ig.7 1_circ_igg.8 1_circ_igg.9 1_circ_igg.10 1_circ_ig.11 1_circ_igg.12 1_circ_igg.13 1_circ_igg.14 1_circ_igg.15 1_circ_ig.16 						
					
						Support reads
						2/1
					
						Tissues
						root;flower
					
						Exon boundary  
						
							NA-NA							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	1_circ_ig.26
ID in PlantcircBase	ath_circ_005586
Alias	1:12197021-12199163
Organism	Arabidpsis thaliana
Position	chr1: 12197021-12199163 JBrowse»
Reference genome	TAIR10.38
Type	ig-circRNA
Identification method	find_circ; CIRI2
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	AT1G33615_circ_g.1 1_circ_igg.2 AT1G33615_circ_g.3 AT1G33615_circ_g.4 AT1G33615_circ_g.5 AT1G33615_circ_g.6 AT1G33615_circ_g.7 AT1G33615_circ_g.8 AT1G33615_circ_g.9 AT1G33615_circ_g.10 AT1G33615_circ_g.11 1_circ_igg.12 1_circ_ag.13 AT1G33615_circ_g.14 AT1G33615_circ_g.15 AT1G33615_circ_g.16 1_circ_igg.17 AT1G33615_circ_g.18 1_circ_igg.19 1_circ_igg.20 1_circ_ig.21 1_circ_ig.22 1_circ_ig.23 1_circ_ig.24 1_circ_ig.25 1_circ_ig.27 1_circ_ig.28 1_circ_ig.29 1_circ_igg.30 AT1G33680_circ_g.1 AT1G33680_circ_g.2 AT1G33680_circ_g.3 AT1G33680_circ_g.4 AT1G33680_circ_g.5 AT1G33680_circ_g.6 AT1G33680_circ_g.7 AT1G33680_circ_g.8 AT1G33680_circ_g.9 AT1G33700_circ_g.1 AT1G33700_circ_g.2 AT1G33700_circ_g.3 AT1G33700_circ_g.4 AT1G33700_circ_g.5 AT1G33790_circ_g.1 AT1G33810_circ_g.1 AT1G33930_circ_g.1 AT1G33960_circ_g.1 AT1G33970_circ_g.1 AT1G33970_circ_g.2 AT1G33970_circ_g.3 AT1G33970_circ_g.4 AT1G33970_circ_g.5 AT1G33980_circ_g.1 AT1G33980_circ_g.2 AT1G33980_circ_g.3 AT1G33980_circ_g.4 AT1G33980_circ_g.5 AT1G33980_circ_g.6 AT1G33980_circ_g.7 AT1G33980_circ_g.8 AT1G33980_circ_g.9 AT1G33990_circ_g.1 AT1G33990_circ_g.2 AT1G34020_circ_g.1 AT1G34020_circ_g.2 AT1G34020_circ_g.3 1_circ_ig.4 1_circ_ig.5 1_circ_ig.6 1_circ_ig.7 1_circ_igg.8 1_circ_igg.9 1_circ_igg.10 1_circ_ig.11 1_circ_igg.12 1_circ_igg.13 1_circ_igg.14 1_circ_igg.15 1_circ_ig.16
Support reads	2/1
Tissues	root;flower
Exon boundary	NA-NA "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GAAAAGAGTTTAAAACGATGAAAAAGATTTAACAAGATTACCTTGTCAGTCATGAGTATATTAA
AGCTCATCTGAAACTTTTGCTCTTTCTTCATAAAACctttgttggctactgaactgtcttcaaa
acttccttaaagctaaataatccttcatcttgaggacctttgtcaaaaattccatttcaactga
agaaagct

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTTTGTTGGCTACTGAACTGTCTTCAAAACTTCCTTAAAGCTAAATAATCCTTCATCTTGAGGA
CCTTTGTCAAAAATTCCATTTCAACTGAAGAAAGCTCTTGAAACCAAAGAAACCTTGTTAATAA
CACGCAGCTTAAACATAGAACGAATAACTTAAATTCAGAAAATCATAAAACCAAAAATGACAAA
CTTACAAAATACTCCCTGTTGACATTTGGTTGCTTCCTCAGCTCATATTATCTTAACGGTAATA
TACATTGTTGGAAGCTGCTGGAAATTTCAAGTCAGCTTTATCTTCTCTAGTTCACCTTATCTAG
TTCTTATTCAAAGATAAAAAATAAACCCGACAAAAGTTTTTTAAGATATAGAATGGTACGGAAG
TAAACTTTTTTGGGATAGTGCAAGCCTCTATATCCTTCGTATCTAATTGCGGTAAAGGAGAGAG
AGGAAGATACTTGACCTTAACATTTGTATGTCCTTGCTAGCGAATAGTCTCCCTTTTGTTCTTT
GCAACTTAAGGATCTCTTCACTTGTGAGGAATGATCTTTATTACTAAGTCAGCAACAAAATAGA
GTAACATAGAGCAAATAAAATGCAAAAGGCTGAACTAAACCAGTAAAAAATTACGGAATTGTAA
AGTTTAACTACATCTTACGTGACCCTTTTCACAAGGGTTGTTAGCTCTGAGATGGAGAAATAGG
AGTGTGGGATCCAGATAAAGCGACAATGTCCTTGTCAGACAAGCCCATCCGCTTAGCAAATACA
TCTCTCAACAGATCAAAACCTTTTGTAGCATCAGGGAGACGACCCTCAGGAGGTGTATGGGGCT
TGTCCTGAAAGCAAGATATGCATGTTAGAAACAGACAATCAAGTCCCACAGCGTTTCAGTATTA
CAAGTATTGAGAGAATGTCTAAATTATCAATCAGCCATGTCAACAAAGAAAGCAGAACACACAC
TCTCAGGAATGATTAACCTCTCTTCAAGGGTGGAAATGAATTTTAGGGCCACCAGTAACTTCAA
CGGCCACAGCACCTGAAAGATCAATTTCTCACCAAAAAGACATTGTAAGTTAGAATCCAAACCC
TAAAGTTATCACCGTCAACAAATTAGAACTTTTCAAAAATCTAAAATCAATCAGCAAGAGAGAT
AGTAGGGAATGCTACCTGATGGGGTCCAGCAACCTAAGAGCAATTTGAATACCATAGTTGGCTC
CATTAACTTGCTCTGCATCAAACCTCATTGTTCTGAATGGACCTCCAGTTCTTGACTGACAATC
GTAAGTTCCAGTAGAGTGCCATCTGCAGAAGAAATCAGATCAGCCATGAGAACCTAAATATTAG
AAACCAACCACACACTGATATAGTTAGTTATTTACGCATGATGCATATCACAACCAATAAAAAT
TAGCAATAAACGGAGACAAATGTGCTTACTTATTTTTGTTTCCTTTCGAATTATGCATATCACA
ACTAAGGCACAATGAGAACGATCACTAATGTGACAAATGTCTTGGTCATCGACTCTGGAATCAG
AGAGGACATTAAAAAGCCTCAGAAATTGGTAGAGACACACATTGTCTTAAAAAGATGACTACGG
TTCAGGGGTTTTGACAAGAAAGTGTACCTCTCAGTGCAAGTCCACCAGCCATTATTCAAGGATC
ATTAGTTCAAACCTTATTCCCTTTATACGTTGAATTTGTGCTTTATATGGCGAGAACTGCATTG
ATATGGATAACTGTGAATTTCAGTATAAATCAAGGTTACGAAACTAGAAAATGATTTACCAATT
CGTCACGAAAGCTTACCTTATTCAAGTCTCTTTATCAACTCCTACATCCGCACACTCACACAAA
ATATTCCAGCAAGAAACACATCAATTAAGGAACAATATCTACATCAAACAGACAGAACCACACA
ACTTAAATATGAGAAAACACACAATGCTATAAAGCACTAACCTTTTTCTCAAATTTTGATACCC
GGTCGGAGCTATCTTCTGAGATTAAAGTGGTTTTACATAAACTCCCATTGGTTCTAATAGAAAA
GAGTTTAAAACGATGAAAAAGATTTAACAAGATTACCTTGTCAGTCATGAGTATATTAAAGCTC
ATCTGAAACTTTTGCTCTTTCTTCATAAAAC
						
					

			
		

Sequences
Splice junction sequence	GAAAAGAGTTTAAAACGATGAAAAAGATTTAACAAGATTACCTTGTCAGTCATGAGTATATTAA AGCTCATCTGAAACTTTTGCTCTTTCTTCATAAAACctttgttggctactgaactgtcttcaaa acttccttaaagctaaataatccttcatcttgaggacctttgtcaaaaattccatttcaactga agaaagct
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTTTGTTGGCTACTGAACTGTCTTCAAAACTTCCTTAAAGCTAAATAATCCTTCATCTTGAGGA CCTTTGTCAAAAATTCCATTTCAACTGAAGAAAGCTCTTGAAACCAAAGAAACCTTGTTAATAA CACGCAGCTTAAACATAGAACGAATAACTTAAATTCAGAAAATCATAAAACCAAAAATGACAAA CTTACAAAATACTCCCTGTTGACATTTGGTTGCTTCCTCAGCTCATATTATCTTAACGGTAATA TACATTGTTGGAAGCTGCTGGAAATTTCAAGTCAGCTTTATCTTCTCTAGTTCACCTTATCTAG TTCTTATTCAAAGATAAAAAATAAACCCGACAAAAGTTTTTTAAGATATAGAATGGTACGGAAG TAAACTTTTTTGGGATAGTGCAAGCCTCTATATCCTTCGTATCTAATTGCGGTAAAGGAGAGAG AGGAAGATACTTGACCTTAACATTTGTATGTCCTTGCTAGCGAATAGTCTCCCTTTTGTTCTTT GCAACTTAAGGATCTCTTCACTTGTGAGGAATGATCTTTATTACTAAGTCAGCAACAAAATAGA GTAACATAGAGCAAATAAAATGCAAAAGGCTGAACTAAACCAGTAAAAAATTACGGAATTGTAA AGTTTAACTACATCTTACGTGACCCTTTTCACAAGGGTTGTTAGCTCTGAGATGGAGAAATAGG AGTGTGGGATCCAGATAAAGCGACAATGTCCTTGTCAGACAAGCCCATCCGCTTAGCAAATACA TCTCTCAACAGATCAAAACCTTTTGTAGCATCAGGGAGACGACCCTCAGGAGGTGTATGGGGCT TGTCCTGAAAGCAAGATATGCATGTTAGAAACAGACAATCAAGTCCCACAGCGTTTCAGTATTA CAAGTATTGAGAGAATGTCTAAATTATCAATCAGCCATGTCAACAAAGAAAGCAGAACACACAC TCTCAGGAATGATTAACCTCTCTTCAAGGGTGGAAATGAATTTTAGGGCCACCAGTAACTTCAA CGGCCACAGCACCTGAAAGATCAATTTCTCACCAAAAAGACATTGTAAGTTAGAATCCAAACCC TAAAGTTATCACCGTCAACAAATTAGAACTTTTCAAAAATCTAAAATCAATCAGCAAGAGAGAT AGTAGGGAATGCTACCTGATGGGGTCCAGCAACCTAAGAGCAATTTGAATACCATAGTTGGCTC CATTAACTTGCTCTGCATCAAACCTCATTGTTCTGAATGGACCTCCAGTTCTTGACTGACAATC GTAAGTTCCAGTAGAGTGCCATCTGCAGAAGAAATCAGATCAGCCATGAGAACCTAAATATTAG AAACCAACCACACACTGATATAGTTAGTTATTTACGCATGATGCATATCACAACCAATAAAAAT TAGCAATAAACGGAGACAAATGTGCTTACTTATTTTTGTTTCCTTTCGAATTATGCATATCACA ACTAAGGCACAATGAGAACGATCACTAATGTGACAAATGTCTTGGTCATCGACTCTGGAATCAG AGAGGACATTAAAAAGCCTCAGAAATTGGTAGAGACACACATTGTCTTAAAAAGATGACTACGG TTCAGGGGTTTTGACAAGAAAGTGTACCTCTCAGTGCAAGTCCACCAGCCATTATTCAAGGATC ATTAGTTCAAACCTTATTCCCTTTATACGTTGAATTTGTGCTTTATATGGCGAGAACTGCATTG ATATGGATAACTGTGAATTTCAGTATAAATCAAGGTTACGAAACTAGAAAATGATTTACCAATT CGTCACGAAAGCTTACCTTATTCAAGTCTCTTTATCAACTCCTACATCCGCACACTCACACAAA ATATTCCAGCAAGAAACACATCAATTAAGGAACAATATCTACATCAAACAGACAGAACCACACA ACTTAAATATGAGAAAACACACAATGCTATAAAGCACTAACCTTTTTCTCAAATTTTGATACCC GGTCGGAGCTATCTTCTGAGATTAAAGTGGTTTTACATAAACTCCCATTGGTTCTAATAGAAAA GAGTTTAAAACGATGAAAAAGATTTAACAAGATTACCTTGTCAGTCATGAGTATATTAAAGCTC ATCTGAAACTTTTGCTCTTTCTTCATAAAAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.098388976

Conservation Information
Conserved circRNAs	NA
PMCS	0.098388976

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of 1_circ_ig.26

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