Detail information of 1_circ_igg.12


General Information
CircRNA Name 1_circ_igg.12
ID in PlantcircBase ath_circ_005572
Alias 1:12195268-12199193
Organism Arabidpsis thaliana
Position chr1: 12195268-12199193  JBrowse»
Reference genome TAIR10.38
Type   igg-circRNA
Identification method find_circ; CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT1G33615_circ_g.1 1_circ_igg.2 AT1G33615_circ_g.3 AT1G33615_circ_g.4 AT1G33615_circ_g.5 AT1G33615_circ_g.6 AT1G33615_circ_g.7 AT1G33615_circ_g.8 AT1G33615_circ_g.9 AT1G33615_circ_g.10 AT1G33615_circ_g.11 1_circ_ag.13 AT1G33615_circ_g.14 AT1G33615_circ_g.15 AT1G33615_circ_g.16 1_circ_igg.17 AT1G33615_circ_g.18 1_circ_igg.19 1_circ_igg.20 1_circ_ig.21 1_circ_ig.22 1_circ_ig.23 1_circ_ig.24 1_circ_ig.25 1_circ_ig.26 1_circ_ig.27 1_circ_ig.28 1_circ_ig.29 1_circ_igg.30 AT1G33680_circ_g.1 AT1G33680_circ_g.2 AT1G33680_circ_g.3 AT1G33680_circ_g.4 AT1G33680_circ_g.5 AT1G33680_circ_g.6 AT1G33680_circ_g.7 AT1G33680_circ_g.8 AT1G33680_circ_g.9 AT1G33700_circ_g.1 AT1G33700_circ_g.2 AT1G33700_circ_g.3 AT1G33700_circ_g.4 AT1G33700_circ_g.5 AT1G33790_circ_g.1 AT1G33810_circ_g.1 AT1G33930_circ_g.1 AT1G33960_circ_g.1 AT1G33970_circ_g.1 AT1G33970_circ_g.2 AT1G33970_circ_g.3 AT1G33970_circ_g.4 AT1G33970_circ_g.5 AT1G33980_circ_g.1 AT1G33980_circ_g.2 AT1G33980_circ_g.3 AT1G33980_circ_g.4 AT1G33980_circ_g.5 AT1G33980_circ_g.6 AT1G33980_circ_g.7 AT1G33980_circ_g.8 AT1G33980_circ_g.9 AT1G33990_circ_g.1 AT1G33990_circ_g.2 AT1G34020_circ_g.1 AT1G34020_circ_g.2 AT1G34020_circ_g.3 1_circ_ig.4 1_circ_ig.5 1_circ_ig.6 1_circ_ig.7 1_circ_igg.8 1_circ_igg.9 1_circ_igg.10 1_circ_ig.11 1_circ_igg.12 1_circ_igg.13 1_circ_igg.14 1_circ_igg.15 1_circ_ig.16
Support reads 1/11/20/5/3
Tissues seedling;root;flower
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACAAGATTACCTTGTCAGTCATGAGTATATTAAAGCTCATCTGAAACTTTTGCTCTTTCTTCA
TAAAACCTGTTTTAAACTGCAAACAATGCTCGTGTActttgttggctactgaatgattttcttt
gcagccaaacaatccttcatcttcaaaccgtttgtcaataagttccatttcaactgaagaaagc
tcttggaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTGTTGGCTACTGAATGATTTTCTTTGCAGCCAAACAATCCTTCATCTTCAAACCGTTTGTC
AATAAGTTCCATTTCAACTGAAGAAAGCTCTTGGAAAGTGTGTGTTTGTATGGCTTGCATTTGT
ACACTTACGATAACTCGAGGAGGGAGAGATCTCTAAAGGAAAAGGCTATTGGTCCTTGTAACCC
ACTTGAACTAAGATTCATTCTCGCATCAAGAAAAACAAAAAGAAGCTGATCAGCAGAATTATCA
GAGAGGGAATTAGTTATTGTCTGGTTAAACTGAATGACTTACATGGACTTTATCTGGTAATTAG
AAATACCTTCCCAAGGGAATAGTCTTGGAGAGAAAAGATCACCAGTTCAAACCTGAACAATGTC
TACATCAAATAGACATAGCCACACAACTTAATTATGAGAAAACACAATACTATAAAGTACTAAC
CTTGTATTAAATGGTGGTCGTCAAACCGTCTTTGCAGCCGAGGAAGCAATCCTTCATCTTGAAA
TCCTTTGTCAAAAGTTCCATTTCAACCAAAGAACATTTGTTAATAACAAGCAGCTTAAACATAG
AACGAATAACTTAAATTCAAAAAATCATAAAACCAAAAATGACACACTTACAGAATCCTCCCTG
TCGTCATTTGGTTGTTTCCTCGGCTCATATTATCTTACCTCTCAGTGCAACTCCACCAGCCATT
GTTCAAGGATTATTAGTTCAAACCTTATTCACTTAATACGTTGAATTTGTGCTTTTTATGGCGT
GAGTTTCAGTATAAGTCAAGGTTCAGAATCTAGAAAATGATTTACCAATTCATCACGAAAGCTT
ACCTTATTCAAGTCTCTTTATCAACTCCTACATCCGCAGACTCACACAAAATTTTCCAGCAAGT
TACACATCAATTAAGCCAATTAAAAGGATATCATACACAAAATAAGGAACAATAACTACATCAA
ACAGACAGAACCACACAACTGAAATATGAGAAAACACACAATGCTATAAAGCACTAACCTTTTT
CTCTAGTTTTGATACCCGGTCGGAGCTATCTTCTGAGATTATAACTGAAACTCCTGAATAAGTT
AATGATGAACTCCTGAATATATTAAAGTGGTTTTACATAAACTCGCACTGGTTCTAGTAGGAAA
GAGTTTAAAGTGATGAAATTTTTTTAACAAGATTACTTTGTCAGTCATGAGTATATTGAAGCGC
ATTCGAAACTTTTGCTCTTACTTCAGAAAACCTGTTTTAAACTGCAAACAATGCTCGTGTGCTT
TCAAATATATAAGTTAATACAAGCTATAATAAAGTAAGTAGATAAGAAAGTAAGAAATAAGGGA
ACAATCACAACACAATTTCTTGTCATCAATTGTGATTATTCACATTTTTTTGTTAAAAACAATC
CTGTGAAAGTTTGTTTTCTGTTTTTAGAAGTTGCGTCTGGACGTTGTGTGCTATGTTTTTTGTT
TGTGCGTTTGAATTTCGTTTTGTGTGTGTGATTTTGTTGTGTGTATGTTCGAGTGTGGTTTTTC
GTGGATTTATGTTCTGTTTTCTGTTTCTTTAAGTTGCGTTTGGACGTTGTGTGCTATGTTTTTT
ATTTGTGTGAATTTCGTTTGTGTTTGGGTGACTTTAAAATAGTTATGTGTGTTTGATTTTTATT
TTTGTGCGTTTATGTGTTTATGCTCTGTTTTTGATACAGTGCAAGAGACATGATACGCGGGAGG
GAGAGAGAGAGCTACTTAACCATACCTTTGTTGGCTACTGAACTGTCTTCAAAACTTCCTTAAA
GCTAAATAATCCTTCATCTTGAGGACCTTTGTCAAAAATTCCATTTCAACTGAAGAAAGCTCTT
GAAACCAAAGAAACCTTGTTAATAACACGCAGCTTAAACATAGAACGAATAACTTAAATTCAGA
AAATCATAAAACCAAAAATGACAAACTTACAAAATACTCCCTGTTGACATTTGGTTGCTTCCTC
AGCTCATATTATCTTAACGGTAATATACATTGTTGGAAGCTGCTGGAAATTTCAAGTCAGCTTT
ATCTTCTCTAGTTCACCTTATCTAGTTCTTATTCAAAGATAAAAAATAAACCCGACAAAAGTTT
TTTAAGATATAGAATGGTACGGAAGTAAACTTTTTTGGGATAGTGCAAGCCTCTATATCCTTCG
TATCTAATTGCGGTAAAGGAGAGAGAGGAAGATACTTGACCTTAACATTTGTATGTCCTTGCTA
GCGAATAGTCTCCCTTTTGTTCTTTGCAACTTAAGGATCTCTTCACTTGTGAGGAATGATCTTT
ATTACTAAGTCAGCAACAAAATAGAGTAACATAGAGCAAATAAAATGCAAAAGGCTGAACTAAA
CCAGTAAAAAATTACGGAATTGTAAAGTTTAACTACATCTTACGTGACCCTTTTCACAAGGGTT
GTTAGCTCTGAGATGGAGAAATAGGAGTGTGGGATCCAGATAAAGCGACAATGTCCTTGTCAGA
CAAGCCCATCCGCTTAGCAAATACATCTCTCAACAGATCAAAACCTTTTGTAGCATCAGGGAGA
CGACCCTCAGGAGGTGTATGGGGCTTGTCCTGAAAGCAAGATATGCATGTTAGAAACAGACAAT
CAAGTCCCACAGCGTTTCAGTATTACAAGTATTGAGAGAATGTCTAAATTATCAATCAGCCATG
TCAACAAAGAAAGCAGAACACACACTCTCAGGAATGATTAACCTCTCTTCAAGGGTGGAAATGA
ATTTTAGGGCCACCAGTAACTTCAACGGCCACAGCACCTGAAAGATCAATTTCTCACCAAAAAG
ACATTGTAAGTTAGAATCCAAACCCTAAAGTTATCACCGTCAACAAATTAGAACTTTTCAAAAA
TCTAAAATCAATCAGCAAGAGAGATAGTAGGGAATGCTACCTGATGGGGTCCAGCAACCTAAGA
GCAATTTGAATACCATAGTTGGCTCCATTAACTTGCTCTGCATCAAACCTCATTGTTCTGAATG
GACCTCCAGTTCTTGACTGACAATCGTAAGTTCCAGTAGAGTGCCATCTGCAGAAGAAATCAGA
TCAGCCATGAGAACCTAAATATTAGAAACCAACCACACACTGATATAGTTAGTTATTTACGCAT
GATGCATATCACAACCAATAAAAATTAGCAATAAACGGAGACAAATGTGCTTACTTATTTTTGT
TTCCTTTCGAATTATGCATATCACAACTAAGGCACAATGAGAACGATCACTAATGTGACAAATG
TCTTGGTCATCGACTCTGGAATCAGAGAGGACATTAAAAAGCCTCAGAAATTGGTAGAGACACA
CATTGTCTTAAAAAGATGACTACGGTTCAGGGGTTTTGACAAGAAAGTGTACCTCTCAGTGCAA
GTCCACCAGCCATTATTCAAGGATCATTAGTTCAAACCTTATTCCCTTTATACGTTGAATTTGT
GCTTTATATGGCGAGAACTGCATTGATATGGATAACTGTGAATTTCAGTATAAATCAAGGTTAC
GAAACTAGAAAATGATTTACCAATTCGTCACGAAAGCTTACCTTATTCAAGTCTCTTTATCAAC
TCCTACATCCGCACACTCACACAAAATATTCCAGCAAGAAACACATCAATTAAGGAACAATATC
TACATCAAACAGACAGAACCACACAACTTAAATATGAGAAAACACACAATGCTATAAAGCACTA
ACCTTTTTCTCAAATTTTGATACCCGGTCGGAGCTATCTTCTGAGATTAAAGTGGTTTTACATA
AACTCCCATTGGTTCTAATAGAAAAGAGTTTAAAACGATGAAAAAGATTTAACAAGATTACCTT
GTCAGTCATGAGTATATTAAAGCTCATCTGAAACTTTTGCTCTTTCTTCATAAAACCTGTTTTA
AACTGCAAACAATGCTCGTGTA
Conservation Information
Conserved circRNAs NA
PMCS 0.276277758
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020