Detail information of 1_circ_igg.2


General Information
CircRNA Name 1_circ_igg.2
ID in PlantcircBase ath_circ_005562
Alias 1:12193200-12197547
Organism Arabidpsis thaliana
Position chr1: 12193200-12197547  JBrowse»
Reference genome TAIR10.38
Type   igg-circRNA
Identification method find_circ; CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT1G33615_circ_g.1 AT1G33615_circ_g.3 AT1G33615_circ_g.4 AT1G33615_circ_g.5 AT1G33615_circ_g.6 AT1G33615_circ_g.7 AT1G33615_circ_g.8 AT1G33615_circ_g.9 AT1G33615_circ_g.10 AT1G33615_circ_g.11 1_circ_igg.12 1_circ_ag.13 AT1G33615_circ_g.14 AT1G33615_circ_g.15 AT1G33615_circ_g.16 1_circ_igg.17 AT1G33615_circ_g.18 1_circ_igg.19 1_circ_igg.20 1_circ_ig.21 1_circ_ig.22 1_circ_ig.23 1_circ_ig.24 1_circ_ig.25 1_circ_ig.26 1_circ_ig.27 1_circ_ig.28 1_circ_ig.29 1_circ_igg.30 AT1G33680_circ_g.1 AT1G33680_circ_g.2 AT1G33680_circ_g.3 AT1G33680_circ_g.4 AT1G33680_circ_g.5 AT1G33680_circ_g.6 AT1G33680_circ_g.7 AT1G33680_circ_g.8 AT1G33680_circ_g.9 AT1G33700_circ_g.1 AT1G33700_circ_g.2 AT1G33700_circ_g.3 AT1G33700_circ_g.4 AT1G33700_circ_g.5 AT1G33790_circ_g.1 AT1G33810_circ_g.1 AT1G33930_circ_g.1 AT1G33960_circ_g.1 AT1G33970_circ_g.1 AT1G33970_circ_g.2 AT1G33970_circ_g.3 AT1G33970_circ_g.4 AT1G33970_circ_g.5 AT1G33980_circ_g.1 AT1G33980_circ_g.2 AT1G33980_circ_g.3 AT1G33980_circ_g.4 AT1G33980_circ_g.5 AT1G33980_circ_g.6 AT1G33980_circ_g.7 AT1G33980_circ_g.8 AT1G33980_circ_g.9 AT1G33990_circ_g.1 AT1G33990_circ_g.2 AT1G34020_circ_g.1 AT1G34020_circ_g.2 AT1G34020_circ_g.3 1_circ_ig.4 1_circ_ig.5 1_circ_ig.6 1_circ_ig.7 1_circ_igg.8 1_circ_igg.9 1_circ_igg.10 1_circ_ig.11 1_circ_igg.12 1_circ_igg.13 1_circ_igg.14 1_circ_igg.15 1_circ_ig.16
Support reads 2
Tissues root
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAATTGCGGTAAAGGAGAGAGAGGAAGATACTTGACCTTAACATTTGTATGTCCTTGCTAGCGA
ATAGTCTCCCTTTTGTTCTTTGCAACTTAAGGATCTctctctgtgcaagttcactagccattgt
ttttttcctatgagatcttggggcaaacccagtcaagtaatttcctttcaaattcatgtgacac
aaataaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCTCTGTGCAAGTTCACTAGCCATTGTTTTTTTCCTATGAGATCTTGGGGCAAACCCAGTCAA
GTAATTTCCTTTCAAATTCATGTGACACAAATAAATGTCAGAGACAAATACATTATCAAATGTC
TGTCAAAAGAAATCCCTTTCTTAGGTTGTTGTTTTATGAATCCCTGGGAAAACAATGCACATGA
CTCTTATATATAATGTGAAGAAAGAGGTTGGTAGTGTGTGTGTATGGCTTGAATTTGTATACTT
ACAATGACTCAAAAAGGGAGAGATTTCTAAATGAGACAGCTATTGGTCCTTGTAATCCACTTGA
ACTAAGCTCATCAGTAGAATTCCTTGAGGGAAATTACAAAAATGAGTTATTGTCTGGTTGAAAT
GTTAGACTTACAAGGATTTTATTTGGTAATTAGAAGTACCTTTCAAAAGAATAGTCTTGGAGAG
CAAGGATCACCAGTCCAAACCTTATTGACTTTATACATTGGTTTTATCCTTTCGATGGTGTGAA
CTGCATTAACAAGAGAAAATGGATAACTGTTAGTTTCAGTATAAATCATGGCCAATGCAATGAA
AAATGAAAAACAAGGATTCACATGTAAAATTCTTACCAGATAGAAATGATAAATACATGCTTCT
CTTTTTTCGCATCATCGAGTTCTCAACGCCAAGACATTGGACTGAAAGCACTTTTAGAAACTAA
TGGAAAGCAAGATAGGAAAAAAACGAAGCGAGATTCTGTAAAAAAACACTTGATCAGTGAAACA
GGAATCCTTAAAAAGTCAATTTATAAAACAAGTACTTTGGGAACGGAACATGACTCTATCATTG
TTAATCATATCATAAAGAAAACGTCGGAGCTTTTCCATTGCATTGGCCTCCATTGAATTCATAC
CCAATCTAAAAATGAAAAACAAGGACTTATAGTGACTTGGGGACTATAAATTATTACTAGATAG
AAATGATAAATACCTGCTTCTCGTTTTCTGAATATATAATGCAAATATTTGCAAGTTTATAATA
TCTATCATCATCAAGTTCTCAACGCCAAGACTTTGGGCCTAAACATGTCGTAGCACATTAAGAA
ACTAACCGAAAGCAAGCTAGGAAAATTTCAGTTGTCTCTTACCAATTCGTTACAAAAGCTTACC
TTCATTAAGTCTCTTTATCAACTCCTTAATAGATACATCAGCAGATTCACACAAAGTTATTTCT
GCAAGTTACACATCAATTATGCCAATTAAAACGACATTAGACACAAAATAATGAACAAAAGAAC
AATGTCAACTTAATTATGAGAAAAACACACAATGCTATACTATTAAGCACTACCATTTTCTAAT
TTGGATACTCCGTCGGAGCTATCCTCTGAATAAATGGAAGATCATAGCTGAAACCTCTGAATAC
TTAAAACATATAATTAGGTTTACATAAAGTTACACTAATTCTAATAGAAAGAGTTTAAAATGAT
GATAACAAGATTACCTCATCATTCATGAGTATATTGACACGTATCTGAAACTTTTGCTCTTTCT
TATGAAAACCTTGTTTAAACTACAAACAATGCTCGTGTACACGAAAGTATTTGCAAATATATAA
GTTAATACAAGCTATAATAAAGCAAGTAGATAAGAAAGTAAGAAATAATGGAACAATCACAACG
CAATTTCTTGCCATCAACTATGATTTTTCATACTTTTTTGTTAAAAAAAATCCTGTGAAAGTTT
GTTTTCTGTTTCTTGAAGTTGCGTTTGGACGTTGTATGCTATGTTTTTTGTTTGTGCGTTTGAA
TTTTGTTTTGTATTTTGGTGGCTTTTAATTAATTTTTGTATGCGTTTGACTGTGGGTTTTCGTG
GATTTATGTTTTGTTCTCTGTTTTTTTAAGTTGCATCTAGACGTTGTTTGCTATGATTTTTGTT
TGTTTCGTTGTGTTTCGGTGACTTTAAATTAGTTTTGAGTGCGTTTGAGTGTGGATTTTCGTTG
ATTTATGTTCTGTTTTTGAGACAGTGCAAGAGACATGATAAGTGAGAGAGAGAGAGAGAGAGAG
AGCTACTTAACCATACATACCTTTGTTGGCTACTGAATGATTTTCTTTGCAGCCAAACAATCCT
TCATCTTCAAACCGTTTGTCAATAAGTTCCATTTCAACTGAAGAAAGCTCTTGGAAAGTGTGTG
TTTGTATGGCTTGCATTTGTACACTTACGATAACTCGAGGAGGGAGAGATCTCTAAAGGAAAAG
GCTATTGGTCCTTGTAACCCACTTGAACTAAGATTCATTCTCGCATCAAGAAAAACAAAAAGAA
GCTGATCAGCAGAATTATCAGAGAGGGAATTAGTTATTGTCTGGTTAAACTGAATGACTTACAT
GGACTTTATCTGGTAATTAGAAATACCTTCCCAAGGGAATAGTCTTGGAGAGAAAAGATCACCA
GTTCAAACCTGAACAATGTCTACATCAAATAGACATAGCCACACAACTTAATTATGAGAAAACA
CAATACTATAAAGTACTAACCTTGTATTAAATGGTGGTCGTCAAACCGTCTTTGCAGCCGAGGA
AGCAATCCTTCATCTTGAAATCCTTTGTCAAAAGTTCCATTTCAACCAAAGAACATTTGTTAAT
AACAAGCAGCTTAAACATAGAACGAATAACTTAAATTCAAAAAATCATAAAACCAAAAATGACA
CACTTACAGAATCCTCCCTGTCGTCATTTGGTTGTTTCCTCGGCTCATATTATCTTACCTCTCA
GTGCAACTCCACCAGCCATTGTTCAAGGATTATTAGTTCAAACCTTATTCACTTAATACGTTGA
ATTTGTGCTTTTTATGGCGTGAGTTTCAGTATAAGTCAAGGTTCAGAATCTAGAAAATGATTTA
CCAATTCATCACGAAAGCTTACCTTATTCAAGTCTCTTTATCAACTCCTACATCCGCAGACTCA
CACAAAATTTTCCAGCAAGTTACACATCAATTAAGCCAATTAAAAGGATATCATACACAAAATA
AGGAACAATAACTACATCAAACAGACAGAACCACACAACTGAAATATGAGAAAACACACAATGC
TATAAAGCACTAACCTTTTTCTCTAGTTTTGATACCCGGTCGGAGCTATCTTCTGAGATTATAA
CTGAAACTCCTGAATAAGTTAATGATGAACTCCTGAATATATTAAAGTGGTTTTACATAAACTC
GCACTGGTTCTAGTAGGAAAGAGTTTAAAGTGATGAAATTTTTTTAACAAGATTACTTTGTCAG
TCATGAGTATATTGAAGCGCATTCGAAACTTTTGCTCTTACTTCAGAAAACCTGTTTTAAACTG
CAAACAATGCTCGTGTGCTTTCAAATATATAAGTTAATACAAGCTATAATAAAGTAAGTAGATA
AGAAAGTAAGAAATAAGGGAACAATCACAACACAATTTCTTGTCATCAATTGTGATTATTCACA
TTTTTTTGTTAAAAACAATCCTGTGAAAGTTTGTTTTCTGTTTTTAGAAGTTGCGTCTGGACGT
TGTGTGCTATGTTTTTTGTTTGTGCGTTTGAATTTCGTTTTGTGTGTGTGATTTTGTTGTGTGT
ATGTTCGAGTGTGGTTTTTCGTGGATTTATGTTCTGTTTTCTGTTTCTTTAAGTTGCGTTTGGA
CGTTGTGTGCTATGTTTTTTATTTGTGTGAATTTCGTTTGTGTTTGGGTGACTTTAAAATAGTT
ATGTGTGTTTGATTTTTATTTTTGTGCGTTTATGTGTTTATGCTCTGTTTTTGATACAGTGCAA
GAGACATGATACGCGGGAGGGAGAGAGAGAGCTACTTAACCATACCTTTGTTGGCTACTGAACT
GTCTTCAAAACTTCCTTAAAGCTAAATAATCCTTCATCTTGAGGACCTTTGTCAAAAATTCCAT
TTCAACTGAAGAAAGCTCTTGAAACCAAAGAAACCTTGTTAATAACACGCAGCTTAAACATAGA
ACGAATAACTTAAATTCAGAAAATCATAAAACCAAAAATGACAAACTTACAAAATACTCCCTGT
TGACATTTGGTTGCTTCCTCAGCTCATATTATCTTAACGGTAATATACATTGTTGGAAGCTGCT
GGAAATTTCAAGTCAGCTTTATCTTCTCTAGTTCACCTTATCTAGTTCTTATTCAAAGATAAAA
AATAAACCCGACAAAAGTTTTTTAAGATATAGAATGGTACGGAAGTAAACTTTTTTGGGATAGT
GCAAGCCTCTATATCCTTCGTATCTAATTGCGGTAAAGGAGAGAGAGGAAGATACTTGACCTTA
ACATTTGTATGTCCTTGCTAGCGAATAGTCTCCCTTTTGTTCTTTGCAACTTAAGGATCT
Conservation Information
Conserved circRNAs NA
PMCS 0.094957281
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020