Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G08890_circ_g.1 |
ID in PlantcircBase | ath_circ_001481 |
Alias | At_ciR5143 |
Organism | Arabidpsis thaliana |
Position | chr1: 2848911-2850217 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | AT1G08890 |
Parent gene annotation |
Sugar transporter ERD6-like 1 |
Parent gene strand | + |
Alternative splicing | 1_circ_ag.2 1_circ_ag.3 AT1G08890_circ_g.4 1_circ_ag.5 1_circ_ag.6 AT1G08890_circ_g.7 AT1G08900_circ_g.1 AT1G08900_circ_g.2 |
Support reads | 2 |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G08890.1:8 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.108071098 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
2848932-2850214(+) |
Potential amino acid sequence |
MTLGGMITAAFSGKIAAVIGRRQTMWIADVFCIFGWLAVAFAHDKMLLNIGRGFLGFGVGLISY VVPVYIAEITPKAFRGGFSFSNQLLQSFGISLMFFTGNFFHWRTLALLSAIPCGIQMICLFFIP ESPRWLAMYGRERELEVTLKRLRGENGDILEEAAEIRETVETSRRESRSGLKDLFNMKNAHPLI YSFFTSVMTLGGMITAAFSGKIAAVIGRRQTMWIADVFCIFGWLAVAFAHDKMLLNIGRGFLGF GVGLISYVVPVYIAEITPKAFRGGFSFSNQLLQSFGISLMFFTGNFFHWRTLALLSAIPCGIQM ICLFFIPESPRWLAMYGRERELEVTLKRLRGENGDILEEAAEIRETVETSRRESRSGLKDLFNM KNAHPLIYSFFTSVMTLGGMITAAFSGKIAAVIGRRQTMWIADVFCIFGWLAVAFAHDKMLLNI GRGFLGFGVGLISYVVPVYIAEITPKAFRGGFSFSNQLLQSFGISLMFFTGNFFHWRTLALLSA IPCGIQMICLFFIPESPRWLAMYGRERELEVTLKRLRGENGDILEEAAEIRETVETSRRESRSG LKDLFNMKNAHPLIYSFFTSVMTLGGMITAAFSGKIAAVIGRRQTMWIADVFCIFGWLAVAFAH DKMLLNIGRGFLGFGVGLISYVVPVYIAEITPKAFRGGFSFSNQLLQSFGISLMFFTGNFFHWR TLALLSAIPCGIQMICLFFIPESPRWLAMYGRERELEVTLKRLRGENGDILEEAAEIRETVETS RRESRSGLKDLFNMKNAHPLI(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015 |