Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | AT1G08900_circ_g.2 |
ID in PlantcircBase | ath_circ_001489 |
Alias | 1:2853946-2854223 |
Organism | Arabidpsis thaliana |
Position | chr1: 2853946-2854223 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | find_circ; CIRI2 |
Parent gene | AT1G08900 |
Parent gene annotation |
Sugar transporter ERD6-like 2 |
Parent gene strand | + |
Alternative splicing | AT1G08890_circ_g.1 1_circ_ag.2 1_circ_ag.3 AT1G08890_circ_g.4 1_circ_ag.5 1_circ_ag.6 AT1G08890_circ_g.7 AT1G08900_circ_g.1 |
Support reads | 1/1 |
Tissues | seedling;leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G08900.5:2 AT1G08900.4:2 AT1G08900.2:2 AT1G08900.1:2 AT1G08900.3:2 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.217910758 |
Functional Information | |
---|---|
Coding potential | NA |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Philips et al., 2020 |