Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os03g0220700_circ_g.5 |
ID in PlantcircBase | osa_circ_018567 |
Alias | Os_ciR3882 |
Organism | Oryza sativa |
Position | chr3: 6328345-6328573 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, circseq_cup, find_circ |
Parent gene | Os03g0220700 |
Parent gene annotation |
Similar to (RAP Annotation release2) Peptidase. (Os03t0220700-01 );Conserved hypothetical protein. (Os03t0220700-02) |
Parent gene strand | + |
Alternative splicing | Os03g0220700_circ_g.4 Os03g0220700_circ_g.6 |
Support reads | 2/2/2 |
Tissues | root/root/shoot, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os03t0220700-02:1 Os03t0220700-01:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.397425906 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
6328558-6328407(+) 6328431-6328571(-) |
Potential amino acid sequence |
MNNYSRFPTLEKSYCADSRDTERSHNTNWITEVHFSNRGSNKLWISEVAKIKKRIRSLNLRKSL GQARFSSSTGCIHEQLLKIPNAGEILLRRLERHRTLAQH*(+) MHFSDPISVVRAFGVSRVCAVRFLQRWES*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Ye et al., 2016;Chu et al., 2017 |