Detail information of Os03g0220700_circ_g.5


General Information
CircRNA Name Os03g0220700_circ_g.5
ID in PlantcircBase osa_circ_018567
Alias Os_ciR3882
Organism Oryza sativa
Position chr3: 6328345-6328573  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, circseq_cup, find_circ
Parent gene Os03g0220700
Parent gene annotation Similar to (RAP Annotation release2) Peptidase. (Os03t0220700-01
);Conserved hypothetical protein. (Os03t0220700-02)
Parent gene strand +
Alternative splicing Os03g0220700_circ_g.4 Os03g0220700_circ_g.6
Support reads 2/2/2
Tissues root/root/shoot, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0220700-02:1
Os03t0220700-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAAATTAAAAAAAGAATTCGTTCTCTCAATCTCAGAAAGAGTCTTGGGCAAGCAAGGTTCTCT
AGCTCAACCGGATGTATACATGAACAACTACTCAAGattcccaacgctggagaaatcttactgc
gcagactcgagagacaccgaacgctcgcacaacactaattggatcactgaagtgcatttttcaa
accgagga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 229
Transcript exons: 6328345-6328573
ATTCCCAACGCTGGAGAAATCTTACTGCGCAGACTCGAGAGACACCGAACGCTCGCACAACACT
AATTGGATCACTGAAGTGCATTTTTCAAACCGAGGAAGCAATAAACTTTGGATCTCTGAAGTGG
CAAAAATTAAAAAAAGAATTCGTTCTCTCAATCTCAGAAAGAGTCTTGGGCAAGCAAGGTTCTC
TAGCTCAACCGGATGTATACATGAACAACTACTCAAG

Genomic sequence ATTCCCAACGCTGGAGAAATCTTACTGCGCAGACTCGAGAGACACCGAACGCTCGCACAACACT
AATTGGATCACTGAAGTGCATTTTTCAAACCGAGGAAGCAATAAACTTTGGATCTCTGAAGTGG
CAAAAATTAAAAAAAGAATTCGTTCTCTCAATCTCAGAAAGAGTCTTGGGCAAGCAAGGTTCTC
TAGCTCAACCGGATGTATACATGAACAACTACTCAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.397425906
Functional Information
Coding potential Y
Potential coding position 6328558-6328407(+)
6328431-6328571(-)
Potential amino acid sequence MNNYSRFPTLEKSYCADSRDTERSHNTNWITEVHFSNRGSNKLWISEVAKIKKRIRSLNLRKSL
GQARFSSSTGCIHEQLLKIPNAGEILLRRLERHRTLAQH*(+)
MHFSDPISVVRAFGVSRVCAVRFLQRWES*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA