Detail information of BGIOSGA035165_circ_igg.4


General Information
CircRNA Name BGIOSGA035165_circ_igg.4
ID in PlantcircBase osi_circ_003125
Alias 11:9959775|9961452
Organism Oryza sativa ssp. indica
Position chr11: 9959775-9961452  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA035165_circ_g.1 BGIOSGA035165_circ_igg.1 BGIOSGA035165_circ_igg.2 BGIOSGA035165_circ_igg.3
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACCTGTGGCTAGAGCCAAGGCTGACTAGTTTTGTATGGATGGGGACCTGGGGAAAACAGCAGT
CAGGAGGTGTCTGTCAAGGGTTCAAGGCCTGGCCAGgtaagcgcaaaccttcgcctgattttta
tctacatgctgtggaccacctaaacgttgatccagcaagctgcatattcattgatgacaggttc
attatgat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTAAGCGCAAACCTTCGCCTGATTTTTATCTACATGCTGTGGACCACCTAAACGTTGATCCAGC
AAGCTGCATATTCATTGATGACAGGTTCATTATGATCAATTCATGTCTGGCATGGCTATGTAGT
TACATTGATATCTTAACTGTTTTATTTCTTCTCTTTCCACTGTCAGGATGACAAACATTGAAGC
AGCCCTTAGTGTAGGAATGGTTGGTTTGCAATTTAAAAATGCTGAGGTGCTCAAGAAGGATTTA
TGCTCGCTTGGAGTTGAATTTGCACCTGTGCATGAAGGTGAAATACAAGTCCAATAAGGTTGCA
CTTTGTTAACTCTTCTGCTCATGTGTATAAAATTCATATATCTGACCCTTCTGTCTTCTGAACC
TTGTCAATAACATGAAGACCCCTGATTGTTGCAGATATAAACTACTAATATATTTTGTTTATTC
AAGTGTGCGTATTCTCAAAGCATTCATTAGCTTCCATGTTTCCAACAAGTAAAGGTGAACAAAA
TACCAATGGCTTGGAATACATGCCAGTGCTTAATCAATAGAACTTTACCACAATCTCTGTTCAG
GATAAAAATAAATCATCTTGAACTAACTTTAGGTTAAATTATTTATCTATCTAATACTAGACTA
ATCCAGACAAACTTGTGCTTGGATCAGGTGTAGCTCATGCACACGTTGTTAGCGCTTAAAAAAT
GGAAACATGGTTAGCGCTTAAAAAATCCAGAGTTAATTAAATGAGCACCAGATTCAAGCATAGT
AATTTGCTTAAAGCTAGGTAAAGAACAGCCTGAGCTAGCTGGCTTGAGCCAAAAAAGGATAGTT
TTGAGGAACAAGAACAAACAGGCTCAATCATGTGTTAACTGTTAACTCAAAGCTTGATCAATAA
TCCATCAACTCAAAGCTGTGACTGCATTTTATTGGTTCAATAATCAAGATCCTAAGTAACTATG
TTTTGTCAGAGTGATCGCCAATTAATATTCAAGGTCTTGCATTAAATTATAATGGATGATCATA
TGTATCTGTTATGCTTTCATAATTAAGAGTATCTCTGAAACTCCATGTTCCTCTCAAAAAAAAA
AAAAAGAAAGTCCACATTCCATTGAGTCAGAGTTAATTCATGGCCGGTGTTCGTTGTTAATTGG
CTATGTATATGCTCCTTGTGGTTTTGTGCTTTTTACTGTGTGGTGCAGATGGTAAGTGGTAGTT
TGAAGTAAACCATTTTCTGTTTATTTGTCACATAGCTATGAGGGATCTTGTGAAATTGATTGCT
ATTGCAACCATTAAATTGTCTAGCTCTATTTTGGCTGTGTAGTTTCCAATAAATATTTGTGATT
GATGCCAATTAATGATCGAGAGAAGAGTGGATTTTACAAAAAGACAAGTAACGGATGCCTGGGA
CTATTAAGTTAGCATTCTCTCCATTTGTGCTCCTGGCTTCAGGATGTCACAATAGTTACATAAC
CAGTTCACTTTTACTCAAACTGTAACTAAAGTTGAAGTTTCTTGTGATTTGTCATGACCACTGC
AATAGATATTATACCAGCTGGAAACCTGTAGCTCATGATGGAAACCTGTGGCTAGAGCCAAGGC
TGACTAGTTTTGTATGGATGGGGACCTGGGGAAAACAGCAGTCAGGAGGTGTCTGTCAAGGGTT
CAAGGCCTGGCCAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021