Detail information of BGIOSGA035165_circ_g.1


General Information
CircRNA Name BGIOSGA035165_circ_g.1
ID in PlantcircBase osi_circ_003122
Alias 11:9956895|9957652
Organism Oryza sativa ssp. indica
Position chr11: 9956895-9957652  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA035165
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA035165_circ_igg.1 BGIOSGA035165_circ_igg.2 BGIOSGA035165_circ_igg.3 BGIOSGA035165_circ_igg.4
Support reads NA
Tissues leaf
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered BGIOSGA035165-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCTGTATCAGGAAAATTGTTTCCGAGAGTGATTCGTGATGGCACTGGCACCGGGGTAGGATTA
ATGAATGCCATCGTATGATCCACTTGGTCTTACAGTaatgtcaatgaaggaactcctcgaaaac
aagcatccaacagcatggtctgaatttgagatgggtctaattgatgaggtgtgagttattactt
ttcatata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AATGTCAATGAAGGAACTCCTCGAAAACAAGCATCCAACAGCATGGTCTGAATTTGAGATGGGT
CTAATTGATGAGGTGTGAGTTATTACTTTTCATATATTGGTGAGATATTGGCCACGGTAGTAGG
ATCCTAGTTTTGACTTTTGAATTGTTTTTGCGAAATATTTTTCTCGAAAACGCAAGAGAATTGC
GTTTCATTTCATTAAGGGGAAGAAAATAAAGGAAAAATACAAAGTAGGAGAGACCAAAGCCCTC
CTACACACCCACGCCCCGGCCAACCCCGGCCAACTAGCTGCCTATGTTTCTGTGAAATATACCA
CTAATTATTGACAGTTACTTACTTTGCTAATGGACATTAAAGGTTGCCAAGTTGTGCTTGCCAC
GCTTGAAATGACTTCAGTTCATCAATAACATATGTGGTTCCTTCATTATCTTAGTCATTGTTCT
TACTTCCTGTAATCCTATTTCTTGTATCGAGAAATTCATTACTCCACTAGGTCATTGATCACTG
CTTTCTGGACTTGGTGGACACTTACTAGCTCAACATTTTAGGTGTTTAAACAAGGAAAGTAAGT
TTTATATGTTTGTCCTATAGATAACAAGCACAAAAGGTTATGTGCATTTGAGGATAGACAAGTG
ACGAAAATGCTGAAATTAATCTGTATCAGGAAAATTGTTTCCGAGAGTGATTCGTGATGGCACT
GGCACCGGGGTAGGATTAATGAATGCCATCGTATGATCCACTTGGTCTTACAGT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021