Detail information of BGIOSGA035165_circ_igg.3


General Information
CircRNA Name BGIOSGA035165_circ_igg.3
ID in PlantcircBase osi_circ_003124
Alias 11:9958414|9960088
Organism Oryza sativa ssp. indica
Position chr11: 9958414-9960088  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA035165_circ_g.1 BGIOSGA035165_circ_igg.1 BGIOSGA035165_circ_igg.2 BGIOSGA035165_circ_igg.4
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTTTGCAATTTAAAAATGCTGAGGTGCTCAAGAAGGATTTATGCTCGCTTGGAGTTGAATTTG
CACCTGTGCATGAAGGTGAAATACAAGTCCAATAAGaatgaactggccaaaaagttcttcaatg
atggcaggtcttttgatttggaaggtgagaagatcagatcaggagttttaccggggatacagat
tgttccat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AATGAACTGGCCAAAAAGTTCTTCAATGATGGCAGGTCTTTTGATTTGGAAGGTGAGAAGATCA
GATCAGGAGTTTTACCGGGGATACAGATTGTTCCATTTTATAAACTGGCATCAAATAATCATTG
TTTGAAGATACTTGATTTTGTTCATTGCTTCATTTACTCAGAATTGTTAATTAACTTAATATCC
TACTTCAATGGATTTCCAATAGTAAAATATAGACTCAAAGCTTTGTACTTGTCTAATTATTAAT
AGCTATTGTCTTTTGTGACGTAGGTTTTTCTCAAACCTAATCTGTTAGCTTTTTTTATATCTTA
GAAGATGTTTATTATTATTGTGTTTTTTCCTATAGGTTTGAAAGCATGCATGGTGAGGGCATAT
GAGTACATCGATGGTGTTGAAGACATTCTTTACAGTTTGAAGCAAAATAACTATGAAGTGCATG
CATTTACAAATTATCCAGTGTGGTGGGTTTCAACTTATCTTGACACATTTGTACACATGTGCTT
GTTCGGTTGTTCCTGAAATATGTTCTGTAGGTACCAGTTAGTTGAGGAGAAGTTAAAGCTCTCA
AAGTATTTGTCCTGGACATTCTGTTCATGCACAGTTGGTAATACTATTTCTCAGATTTTATTTT
TCTTTTTAAATGGAGTAATATATTAATATATATGTTAACAGATCGATGTCTATGGATCAAATGG
ACTTCTTTATGTCATAAAATGGTTAGATATAGTATGTTGGTTCTTTAGTGCATAAAACCAATAT
GAGCTGAACACATTGTCACCAACTTTAATATCTTTGTAGGATAACGTTTTCCTACTCCTCAAAC
TTACATCATTCTCAATTCTATACACACAATTTTATAACCGAATATAATATTTACACATAGTTGA
CCAACGTTGAGCATGCATTGCTGTGCTGACACAGCATAAAATCGCCTTTCCAGAGCAGGGGTGC
ACTCTATCTGTTACCGGAAGTTGAGGGGGAGGTTTTTATCCAATTGACAGTTGGGGTGAAAATT
AAACTTTAGAAATAGTTGAGGGATGAAAAATAGACTTTTTTCCTTTTTGTGGTACCCTTTTTTA
GGCAATTTAGTGTTAATATGTTCTGTAATGTACATGAGCCCGACTAGTTTGTACTAGGTGTGGC
ATTAGCTTCTATCTTGAGTTGGAACAGACTGATGTAGTAGCTTAGTAGTTTTGTTATTATGTGT
TAAATGATGAAGCATAAGGGAACTTGTTAAGTTGTGGTGTCTTCATGATGGGTCATTATGATGT
TGTGTGGTCATCAATGATCAAAATGACCAAACTTGAATGCAAATACTATCTCTAATTTGTTGTT
ACAATTTCATTCTTCAGGTAAGCGCAAACCTTCGCCTGATTTTTATCTACATGCTGTGGACCAC
CTAAACGTTGATCCAGCAAGCTGCATATTCATTGATGACAGGTTCATTATGATCAATTCATGTC
TGGCATGGCTATGTAGTTACATTGATATCTTAACTGTTTTATTTCTTCTCTTTCCACTGTCAGG
ATGACAAACATTGAAGCAGCCCTTAGTGTAGGAATGGTTGGTTTGCAATTTAAAAATGCTGAGG
TGCTCAAGAAGGATTTATGCTCGCTTGGAGTTGAATTTGCACCTGTGCATGAAGGTGAAATACA
AGTCCAATAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021