Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G08520_circ_g.9 |
ID in PlantcircBase | ath_circ_001409 |
Alias | At_ciR2244 |
Organism | Arabidpsis thaliana |
Position | chr1: 2698627-2699400 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | AT1G08520 |
Parent gene annotation |
Mg-protoporphyrin IX chelatase |
Parent gene strand | + |
Alternative splicing | AT1G08520_circ_g.1 AT1G08520_circ_g.2 AT1G08520_circ_g.3 AT1G08520_circ_g.4 AT1G08520_circ_g.5 AT1G08520_circ_g.6 AT1G08520_circ_g.7 AT1G08520_circ_g.8 AT1G08520_circ_g.10 AT1G08520_circ_g.11 AT1G08520_circ_g.12 AT1G08520_circ_g.13 AT1G08520_circ_g.14 |
Support reads | 4 |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G08520.1:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.283565109 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
2699389-2699397(+) |
Potential amino acid sequence |
MLPKGHRAELYAARVAKCLAAIEGREKVTIDDLRKAVELVILPRSSLDETPPEQQNQPPPPPPP PQNSESGEEENEEEQEEEEEDESNEENENEQQQDQIPEEFIFDAEGGLVDEKLLFFAQQAQKRR GKAGRAKNVIFSEDRGRYIKPMLPKGHRAELYAARVAKCLAAIEGREKVTIDDLRKAVELVILP RSSLDETPPEQQNQPPPPPPPPQNSESGEEENEEEQEEEEEDESNEENENEQQQDQIPEEFIFD AEGGLVDEKLLFFAQQAQKRRGKAGRAKNVIFSEDRGRYIKPMLPKGHRAELYAARVAKCLAAI EGREKVTIDDLRKAVELVILPRSSLDETPPEQQNQPPPPPPPPQNSESGEEENEEEQEEEEEDE SNEENENEQQQDQIPEEFIFDAEGGLVDEKLLFFAQQAQKRRGKAGRAKNVIFSEDRGRYIKPM LPK(+) |
Sponge-miRNAs | ath-miR5021 |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015 |