Plant Circular RNA Database

Detail information of AT1G08520_circ_g.5

			
						 General Information
					
						CircRNA Name
						AT1G08520_circ_g.5
					
						ID in PlantcircBase
						ath_circ_001405
					
						Alias
						Ath_circ_FC0251, Ath_circ_FC0252, Ath_circ_FC0253
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr1: 2697015-2700413  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						KNIFE, PcircRNA_finder, circRNA_finder, find_circ
					
						Parent gene
						
							AT1G08520						
					
						Parent gene annotation
						
							Mg-protoporphyrin IX chelatase
							
						Parent gene strand
						+
					
						Alternative splicing
						
							AT1G08520_circ_g.1 AT1G08520_circ_g.2 AT1G08520_circ_g.3 AT1G08520_circ_g.4 AT1G08520_circ_g.6 AT1G08520_circ_g.7 AT1G08520_circ_g.8 AT1G08520_circ_g.9 AT1G08520_circ_g.10 AT1G08520_circ_g.11 AT1G08520_circ_g.12 AT1G08520_circ_g.13 AT1G08520_circ_g.14 						
					
						Support reads
						23
					
						Tissues
						whole_plant
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT1G08520.1:12

General Information
CircRNA Name	AT1G08520_circ_g.5
ID in PlantcircBase	ath_circ_001405
Alias	Ath_circ_FC0251, Ath_circ_FC0252, Ath_circ_FC0253
Organism	Arabidpsis thaliana
Position	chr1: 2697015-2700413 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	KNIFE, PcircRNA_finder, circRNA_finder, find_circ
Parent gene	AT1G08520
Parent gene annotation	Mg-protoporphyrin IX chelatase
Parent gene strand	+
Alternative splicing	AT1G08520_circ_g.1 AT1G08520_circ_g.2 AT1G08520_circ_g.3 AT1G08520_circ_g.4 AT1G08520_circ_g.6 AT1G08520_circ_g.7 AT1G08520_circ_g.8 AT1G08520_circ_g.9 AT1G08520_circ_g.10 AT1G08520_circ_g.11 AT1G08520_circ_g.12 AT1G08520_circ_g.13 AT1G08520_circ_g.14
Support reads	23
Tissues	whole_plant
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT1G08520.1:12

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TGCGATAACCGATGGTCGAGCCAACATTACACTGAAAAGATCAACTGATCCGGAGTCTATTGCC
CCAGATGCTCCTAGACCCACGTCCAAAGAATTGAAGgaaggcataaaaactgctcttttacttg
gcgcggttgatcgtgaaatcggagggattgccatttcaggtcgtagaggcactgcaaaaacagt
catggcgc

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GAAGGCATAAAAACTGCTCTTTTACTTGGCGCGGTTGATCGTGAAATCGGAGGGATTGCCATTT
CAGGTCGTAGAGGCACTGCAAAAACAGTCATGGCGCGAGGGCTTCATGAAATCCTCCCTCCTAT
TGAAGTTGTTGTAGGCTCAATATCAAATGCTGACCCAGCTTGTCCAGATGAGTAAGATTCTTAC
AATCTGAGAAAGAAATTGCTTTTCTTCTTCTTTTAATTCTTACACTGTTGGCTTGTACCTTTTG
TGATATATGTAGGTGGGAAGATGACTTAGATGAGCGCATAGAGTACAATGCTGACAATACCATT
AAGACTGAGATTGTCAAATCTCCTTTCATTCAGGTACATTTAGTTTTAGGAGGCATTACAATTT
TTCTGAAATTGTTTTTCTTTTTACTTAGGTTTTCCTGTCGTTTATGTCACACAGATTCCACTAG
GAGTTACAGAAGACAGACTCATTGGGTCTGTTGATGTTGAGGAGTCTGTGAAAAGGGGGACAAC
TGTTTTCCAACCTGGTCTTTTGGCTGAAGCCCATAGAGGAGTGTTGTATGTTGATGAAATAAAT
CTCTTAGATGAGGGAATTAGTAATTTGCTTCTCAATGTATTGACGGATGGTGTTAATATAGTTG
AAAGAGAAGGAATCAGCTTTAGGCACCCGTGCAAACCACTTTTAATTGCAACCTATAACCCTGA
AGAAGGTGCTGTTCGAGAGCACTTGCTAGACCGTGTTGCCATTAATTTAAGGTACTACTGGAGT
TTATAAATCAAGTGTGATAAATATTGCCTGTTTCTTTTGGGTAATTCCCATTTCTTTCTCTTTT
TACATCACGATGTTAACCTTTGCAGTGCAGACCTACCTATGAGTTTTGAAGATCGTGTCGCAGC
AGTTGGAATTGCCACACAGTTTCAGGAACGCTGTAATGAGGTTTTTAGAATGGTAAATGAAGAG
ACAGAAACAGCAAAGACGCAGGTATCTTCAAATGAATTAAGAAAAAAAGGGCCTCATTAGTAAA
AATTTGATGGGATGCTATGCTTCTCATCCCACTTTTCTCGATCATAATCCAGTGCATTTTCTCT
GACTTTAGATTATATTGGCTAGAGAATATTTGAAAGATGTCAAGATAAGTAGAGAGCAATTGAA
GTATCTGGTTTTGGAAGCTGTCCGAGGTGGTGTCCAGGTATTGAGCAAAAATTCTGAAGTAATT
TTTTGTTAATGGAAGAAATACACTTAGTAACATATTCCTGGAAGAAAAAGGATAAACACGAAAA
GAAAGGACAAGATGCATGCAATGATGCAACATAATGTCACGATTATAGACTTCAACTAGTATAG
GGCTCAAGAAATGGCTCACCACAGGCAGAAAGATACATCTAGATAGAGTTGTTTTGATTTAGAA
ACAACGCTGGAAAAAGAAGGGCCTGGCATCAAATGCTTTTGTTGCGCTGTTGATTGTAATATTT
CACCAAGTTATGATCATATCACTATAGTTATATTTCTGCGTTTGGTTTACTTGGTAGTTACTTC
TCATGGCGTATCTTTTGTCGATGATTACCTGGAATCGTTTAATACTCCTTTCCCAAATAACAAA
TTTATGATACAGGGACACCGCGCCGAATTGTATGCAGCTCGTGTGGCGAAGTGTTTAGCTGCAA
TTGAAGGACGAGAAAAAGTCACAATCGATGACCTCAGAAAGGCCGTAAGTACTCTTCTCTAGCT
CATTCATTTTTGTTTTCTTTCCCAGAACGATCAAGCAAGTCATAAACTTATAGAATTAGTCATC
CTACGTTTACTTTCACTTTCCTTGTATTGTCTTTGTCTATAATTGAACATCTTAATAGAAATTT
TTGATTAGCAATGTAGAATGACGCTCTATAATGATTTGGATGGAGTATTTATGATATCCTCTAG
TTATTGATTAGCAAATGTGGTCCATTTTTTCAATAGGTTGAGCTGGTCATTCTTCCTCGTTCAT
CACTAGATGAGACTCCACCTGAACAACAAAACCAACCACCACCTCCTCCACCTCCTCCACAAAA
TAGCGAATCTGGAGAAGAAGAAAATGAAGAAGAACAAGAAGAAGAAGAAGAGGTCAGTGGATGC
AGTACACATTATTCTCTCGTTGAACACACGTTCAAGGTTCTAAAGTAGAAATCATTAACCAATG
TAGGATGAAAGCAATGAAGAAAATGAAAATGAGCAGCAACAGGACCAAATACCTGAAGAGTTTA
TATTTGACGCTGAGGGCGGTCTGGTGGATGAGAAACTCCTCTTCTTTGCTCAACAAGCCCAGAA
ACGTCGGGGGAAAGCTGGCAGGGCGAAGAATGTCATATTCTCAGAAGATAGAGGACGCTACATA
AAGCCAATGCTTCCAAAGGTTTGCCCTTAACAAATTCTCAGGCTCCCAAACATGCATAGTCCTT
AACAAATTTTACTTTGATAGGGTCCAGTAAAAAGATTAGCTGTGGATGCAACCCTTAGAGCAGC
TGCACCATACCAGAAATTGCGCAGAGAGAAGGATATCTCAGGAACTAGGAAAGTCTTTGTTGAG
AAGACAGATATGAGGGCCAAAAGAATGGCAAGGAAAGCTGGAGCCCTGGTACTGAACCTTGTCC
ATACATTCTTCTAAAAGATTGTATATAAACAGTTTCCTTGATACAACATTATTCTCACTTTATA
CTTTAAACAGATGTTTGGCATGATAAATTTGACAGTTTCCTTGACACAAGCTTCAGTGAAAACA
TAGATAATATCTGATTACGCTTCTGTTTACCATTGTTGTATGGCAGGTTATCTTTGTGGTTGAT
GCAAGTGGCAGTATGGCATTGAATCGTATGCAAAACGCCAAAGGTGCTGCACTCAAACTACTGG
CAGAGAGCTATACTAGCAGGGATCAGGTAAAGGTTACTTTTTTTGAATAGTTAACGTGCTTGTT
GCTAGTTTGGATGAATTCATTGGGCCTTCGGATGAGACTCAATACACCAGTAATTGGTTTAGGT
TTCGATTATTCCTTTCCGAGGGGATGCTGCGGAAGTGCTCTTGCCCCCTTCTAGATCAATAGCA
ATGGCAAGGAATCGTCTTGAGAGACTTCCTTGTGGTGGTGGTTCTCCTCTTGCCCATGGTTTAA
CAACGGTATGTCAAATATTATGGTGTTGTTAGTAAGATAACTGCTAGTATCGACTAAATTGTGG
GTCAGCATAATCGTAACAGTAACAACTATATTCATATCAGGCTGTAAGAGTAGGACTTAACGCA
GAGAAGAGTGGTGATGTCGGGCGCATAATGATTGTTGCGATAACCGATGGTCGAGCCAACATTA
CACTGAAAAGATCAACTGATCCGGAGTCTATTGCCCCAGATGCTCCTAGACCCACGTCCAAAGA
ATTGAAG
						
					

			
		

Sequences
Splice junction sequence	TGCGATAACCGATGGTCGAGCCAACATTACACTGAAAAGATCAACTGATCCGGAGTCTATTGCC CCAGATGCTCCTAGACCCACGTCCAAAGAATTGAAGgaaggcataaaaactgctcttttacttg gcgcggttgatcgtgaaatcggagggattgccatttcaggtcgtagaggcactgcaaaaacagt catggcgc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GAAGGCATAAAAACTGCTCTTTTACTTGGCGCGGTTGATCGTGAAATCGGAGGGATTGCCATTT CAGGTCGTAGAGGCACTGCAAAAACAGTCATGGCGCGAGGGCTTCATGAAATCCTCCCTCCTAT TGAAGTTGTTGTAGGCTCAATATCAAATGCTGACCCAGCTTGTCCAGATGAGTAAGATTCTTAC AATCTGAGAAAGAAATTGCTTTTCTTCTTCTTTTAATTCTTACACTGTTGGCTTGTACCTTTTG TGATATATGTAGGTGGGAAGATGACTTAGATGAGCGCATAGAGTACAATGCTGACAATACCATT AAGACTGAGATTGTCAAATCTCCTTTCATTCAGGTACATTTAGTTTTAGGAGGCATTACAATTT TTCTGAAATTGTTTTTCTTTTTACTTAGGTTTTCCTGTCGTTTATGTCACACAGATTCCACTAG GAGTTACAGAAGACAGACTCATTGGGTCTGTTGATGTTGAGGAGTCTGTGAAAAGGGGGACAAC TGTTTTCCAACCTGGTCTTTTGGCTGAAGCCCATAGAGGAGTGTTGTATGTTGATGAAATAAAT CTCTTAGATGAGGGAATTAGTAATTTGCTTCTCAATGTATTGACGGATGGTGTTAATATAGTTG AAAGAGAAGGAATCAGCTTTAGGCACCCGTGCAAACCACTTTTAATTGCAACCTATAACCCTGA AGAAGGTGCTGTTCGAGAGCACTTGCTAGACCGTGTTGCCATTAATTTAAGGTACTACTGGAGT TTATAAATCAAGTGTGATAAATATTGCCTGTTTCTTTTGGGTAATTCCCATTTCTTTCTCTTTT TACATCACGATGTTAACCTTTGCAGTGCAGACCTACCTATGAGTTTTGAAGATCGTGTCGCAGC AGTTGGAATTGCCACACAGTTTCAGGAACGCTGTAATGAGGTTTTTAGAATGGTAAATGAAGAG ACAGAAACAGCAAAGACGCAGGTATCTTCAAATGAATTAAGAAAAAAAGGGCCTCATTAGTAAA AATTTGATGGGATGCTATGCTTCTCATCCCACTTTTCTCGATCATAATCCAGTGCATTTTCTCT GACTTTAGATTATATTGGCTAGAGAATATTTGAAAGATGTCAAGATAAGTAGAGAGCAATTGAA GTATCTGGTTTTGGAAGCTGTCCGAGGTGGTGTCCAGGTATTGAGCAAAAATTCTGAAGTAATT TTTTGTTAATGGAAGAAATACACTTAGTAACATATTCCTGGAAGAAAAAGGATAAACACGAAAA GAAAGGACAAGATGCATGCAATGATGCAACATAATGTCACGATTATAGACTTCAACTAGTATAG GGCTCAAGAAATGGCTCACCACAGGCAGAAAGATACATCTAGATAGAGTTGTTTTGATTTAGAA ACAACGCTGGAAAAAGAAGGGCCTGGCATCAAATGCTTTTGTTGCGCTGTTGATTGTAATATTT CACCAAGTTATGATCATATCACTATAGTTATATTTCTGCGTTTGGTTTACTTGGTAGTTACTTC TCATGGCGTATCTTTTGTCGATGATTACCTGGAATCGTTTAATACTCCTTTCCCAAATAACAAA TTTATGATACAGGGACACCGCGCCGAATTGTATGCAGCTCGTGTGGCGAAGTGTTTAGCTGCAA TTGAAGGACGAGAAAAAGTCACAATCGATGACCTCAGAAAGGCCGTAAGTACTCTTCTCTAGCT CATTCATTTTTGTTTTCTTTCCCAGAACGATCAAGCAAGTCATAAACTTATAGAATTAGTCATC CTACGTTTACTTTCACTTTCCTTGTATTGTCTTTGTCTATAATTGAACATCTTAATAGAAATTT TTGATTAGCAATGTAGAATGACGCTCTATAATGATTTGGATGGAGTATTTATGATATCCTCTAG TTATTGATTAGCAAATGTGGTCCATTTTTTCAATAGGTTGAGCTGGTCATTCTTCCTCGTTCAT CACTAGATGAGACTCCACCTGAACAACAAAACCAACCACCACCTCCTCCACCTCCTCCACAAAA TAGCGAATCTGGAGAAGAAGAAAATGAAGAAGAACAAGAAGAAGAAGAAGAGGTCAGTGGATGC AGTACACATTATTCTCTCGTTGAACACACGTTCAAGGTTCTAAAGTAGAAATCATTAACCAATG TAGGATGAAAGCAATGAAGAAAATGAAAATGAGCAGCAACAGGACCAAATACCTGAAGAGTTTA TATTTGACGCTGAGGGCGGTCTGGTGGATGAGAAACTCCTCTTCTTTGCTCAACAAGCCCAGAA ACGTCGGGGGAAAGCTGGCAGGGCGAAGAATGTCATATTCTCAGAAGATAGAGGACGCTACATA AAGCCAATGCTTCCAAAGGTTTGCCCTTAACAAATTCTCAGGCTCCCAAACATGCATAGTCCTT AACAAATTTTACTTTGATAGGGTCCAGTAAAAAGATTAGCTGTGGATGCAACCCTTAGAGCAGC TGCACCATACCAGAAATTGCGCAGAGAGAAGGATATCTCAGGAACTAGGAAAGTCTTTGTTGAG AAGACAGATATGAGGGCCAAAAGAATGGCAAGGAAAGCTGGAGCCCTGGTACTGAACCTTGTCC ATACATTCTTCTAAAAGATTGTATATAAACAGTTTCCTTGATACAACATTATTCTCACTTTATA CTTTAAACAGATGTTTGGCATGATAAATTTGACAGTTTCCTTGACACAAGCTTCAGTGAAAACA TAGATAATATCTGATTACGCTTCTGTTTACCATTGTTGTATGGCAGGTTATCTTTGTGGTTGAT GCAAGTGGCAGTATGGCATTGAATCGTATGCAAAACGCCAAAGGTGCTGCACTCAAACTACTGG CAGAGAGCTATACTAGCAGGGATCAGGTAAAGGTTACTTTTTTTGAATAGTTAACGTGCTTGTT GCTAGTTTGGATGAATTCATTGGGCCTTCGGATGAGACTCAATACACCAGTAATTGGTTTAGGT TTCGATTATTCCTTTCCGAGGGGATGCTGCGGAAGTGCTCTTGCCCCCTTCTAGATCAATAGCA ATGGCAAGGAATCGTCTTGAGAGACTTCCTTGTGGTGGTGGTTCTCCTCTTGCCCATGGTTTAA CAACGGTATGTCAAATATTATGGTGTTGTTAGTAAGATAACTGCTAGTATCGACTAAATTGTGG GTCAGCATAATCGTAACAGTAACAACTATATTCATATCAGGCTGTAAGAGTAGGACTTAACGCA GAGAAGAGTGGTGATGTCGGGCGCATAATGATTGTTGCGATAACCGATGGTCGAGCCAACATTA CACTGAAAAGATCAACTGATCCGGAGTCTATTGCCCCAGATGCTCCTAGACCCACGTCCAAAGA ATTGAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.166463518

Conservation Information
Conserved circRNAs	NA
PMCS	0.166463518

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							2697108-2700410(+)
						
					

						Potential amino acid sequence
						
							MARGLHEILPPIEVVVGSISNADPACPDEWEDDLDERIEYNADNTIKTEIVKSPFIQIPLGVTE
DRLIGSVDVEESVKRGTTVFQPGLLAEAHRGVLYVDEINLLDEGISNLLLNVLTDGVNIVEREG
ISFRHPCKPLLIATYNPEEGAVREHLLDRVAINLSADLPMSFEDRVAAVGIATQFQERCNEVFR
MVNEETETAKTQIILAREYLKDVKISREQLKYLVLEAVRGGVQGHRAELYAARVAKCLAAIEGR
EKVTIDDLRKAVELVILPRSSLDETPPEQQNQPPPPPPPPQNSESGEEENEEEQEEEEEDESNE
ENENEQQQDQIPEEFIFDAEGGLVDEKLLFFAQQAQKRRGKAGRAKNVIFSEDRGRYIKPMLPK
GPVKRLAVDATLRAAAPYQKLRREKDISGTRKVFVEKTDMRAKRMARKAGALVIFVVDASGSMA
LNRMQNAKGAALKLLAESYTSRDQVSIIPFRGDAAEVLLPPSRSIAMARNRLERLPCGGGSPLA
HGLTTAVRVGLNAEKSGDVGRIMIVAITDGRANITLKRSTDPESIAPDAPRPTSKELKEGIKTA
LLLGAVDREIGGIAISGRRGTAKTVMARGLHEILPPIEVVVGSISNADPACPDEWEDDLDERIE
YNADNTIKTEIVKSPFIQIPLGVTEDRLIGSVDVEESVKRGTTVFQPGLLAEAHRGVLYVDEIN
LLDEGISNLLLNVLTDGVNIVEREGISFRHPCKPLLIATYNPEEGAVREHLLDRVAINLSADLP
MSFEDRVAAVGIATQFQERCNEVFRMVNEETETAKTQIILAREYLKDVKISREQLKYLVLEAVR
GGVQGHRAELYAARVAKCLAAIEGREKVTIDDLRKAVELVILPRSSLDETPPEQQNQPPPPPPP
PQNSESGEEENEEEQEEEEEDESNEENENEQQQDQIPEEFIFDAEGGLVDEKLLFFAQQAQKRR
GKAGRAKNVIFSEDRGRYIKPMLPKGPVKRLAVDATLRAAAPYQKLRREKDISGTRKVFVEKTD
MRAKRMARKAGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTSRDQVSIIPFRGDAAEVLL
PPSRSIAMARNRLERLPCGGGSPLAHGLTTAVRVGLNAEKSGDVGRIMIVAITDGRANITLKRS
TDPESIAPDAPRPTSKELKEGIKTALLLGAVDREIGGIAISGRRGTAKTVMARGLHEILPPIEV
VVGSISNADPACPDEWEDDLDERIEYNADNTIKTEIVKSPFIQIPLGVTEDRLIGSVDVEESVK
RGTTVFQPGLLAEAHRGVLYVDEINLLDEGISNLLLNVLTDGVNIVEREGISFRHPCKPLLIAT
YNPEEGAVREHLLDRVAINLSADLPMSFEDRVAAVGIATQFQERCNEVFRMVNEETETAKTQII
LAREYLKDVKISREQLKYLVLEAVRGGVQGHRAELYAARVAKCLAAIEGREKVTIDDLRKAVEL
VILPRSSLDETPPEQQNQPPPPPPPPQNSESGEEENEEEQEEEEEDESNEENENEQQQDQIPEE
FIFDAEGGLVDEKLLFFAQQAQKRRGKAGRAKNVIFSEDRGRYIKPMLPKGPVKRLAVDATLRA
AAPYQKLRREKDISGTRKVFVEKTDMRAKRMARKAGALVIFVVDASGSMALNRMQNAKGAALKL
LAESYTSRDQVSIIPFRGDAAEVLLPPSRSIAMARNRLERLPCGGGSPLAHGLTTAVRVGLNAE
KSGDVGRIMIVAITDGRANITLKRSTDPESIAPDAPRPTSKELKEGIKTALLLGAVDREIGGIA
ISGRRGTAKTVMARGLHEILPPIEVVVGSISNADPACPDEWEDDLDERIEYNADNTIKTEIVKS
PFIQIPLGVTEDRLIGSVDVEESVKRGTTVFQPGLLAEAHRGVLYVDEINLLDEGISNLLLNVL
TDGVNIVEREGISFRHPCKPLLIATYNPEEGAVREHLLDRVAINLSADLPMSFEDRVAAVGIAT
QFQERCNEVFRMVNEETETAKTQIILAREYLKDVKISREQLKYLVLEAVRGGVQGHRAELYAAR
VAKCLAAIEGREKVTIDDLRKAVELVILPRSSLDETPPEQQNQPPPPPPPPQNSESGEEENEEE
QEEEEEDESNEENENEQQQDQIPEEFIFDAEGGLVDEKLLFFAQQAQKRRGKAGRAKNVIFSED
RGRYIKPMLPKGPVKRLAVDATLRAAAPYQKLRREKDISGTRKVFVEKTDMRAKRMARKAGALV
IFVVDASGSMALNRMQNAKGAALKLLAESYTSRDQVSIIPFRGDAAEVLLPPSRSIAMARNRLE
RLPCGGGSPLAHGLTTAVRVGLNAEKSGDVGRIMIVAITDGRANITLKRSTDPESIAPDAPRPT
SKELK(+)
						
					

						Sponge-miRNAs
						
							ath-miR5021 						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	2697108-2700410(+)
Potential amino acid sequence	MARGLHEILPPIEVVVGSISNADPACPDEWEDDLDERIEYNADNTIKTEIVKSPFIQIPLGVTE DRLIGSVDVEESVKRGTTVFQPGLLAEAHRGVLYVDEINLLDEGISNLLLNVLTDGVNIVEREG ISFRHPCKPLLIATYNPEEGAVREHLLDRVAINLSADLPMSFEDRVAAVGIATQFQERCNEVFR MVNEETETAKTQIILAREYLKDVKISREQLKYLVLEAVRGGVQGHRAELYAARVAKCLAAIEGR EKVTIDDLRKAVELVILPRSSLDETPPEQQNQPPPPPPPPQNSESGEEENEEEQEEEEEDESNE ENENEQQQDQIPEEFIFDAEGGLVDEKLLFFAQQAQKRRGKAGRAKNVIFSEDRGRYIKPMLPK GPVKRLAVDATLRAAAPYQKLRREKDISGTRKVFVEKTDMRAKRMARKAGALVIFVVDASGSMA LNRMQNAKGAALKLLAESYTSRDQVSIIPFRGDAAEVLLPPSRSIAMARNRLERLPCGGGSPLA HGLTTAVRVGLNAEKSGDVGRIMIVAITDGRANITLKRSTDPESIAPDAPRPTSKELKEGIKTA LLLGAVDREIGGIAISGRRGTAKTVMARGLHEILPPIEVVVGSISNADPACPDEWEDDLDERIE YNADNTIKTEIVKSPFIQIPLGVTEDRLIGSVDVEESVKRGTTVFQPGLLAEAHRGVLYVDEIN LLDEGISNLLLNVLTDGVNIVEREGISFRHPCKPLLIATYNPEEGAVREHLLDRVAINLSADLP MSFEDRVAAVGIATQFQERCNEVFRMVNEETETAKTQIILAREYLKDVKISREQLKYLVLEAVR GGVQGHRAELYAARVAKCLAAIEGREKVTIDDLRKAVELVILPRSSLDETPPEQQNQPPPPPPP PQNSESGEEENEEEQEEEEEDESNEENENEQQQDQIPEEFIFDAEGGLVDEKLLFFAQQAQKRR GKAGRAKNVIFSEDRGRYIKPMLPKGPVKRLAVDATLRAAAPYQKLRREKDISGTRKVFVEKTD MRAKRMARKAGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTSRDQVSIIPFRGDAAEVLL PPSRSIAMARNRLERLPCGGGSPLAHGLTTAVRVGLNAEKSGDVGRIMIVAITDGRANITLKRS TDPESIAPDAPRPTSKELKEGIKTALLLGAVDREIGGIAISGRRGTAKTVMARGLHEILPPIEV VVGSISNADPACPDEWEDDLDERIEYNADNTIKTEIVKSPFIQIPLGVTEDRLIGSVDVEESVK RGTTVFQPGLLAEAHRGVLYVDEINLLDEGISNLLLNVLTDGVNIVEREGISFRHPCKPLLIAT YNPEEGAVREHLLDRVAINLSADLPMSFEDRVAAVGIATQFQERCNEVFRMVNEETETAKTQII LAREYLKDVKISREQLKYLVLEAVRGGVQGHRAELYAARVAKCLAAIEGREKVTIDDLRKAVEL VILPRSSLDETPPEQQNQPPPPPPPPQNSESGEEENEEEQEEEEEDESNEENENEQQQDQIPEE FIFDAEGGLVDEKLLFFAQQAQKRRGKAGRAKNVIFSEDRGRYIKPMLPKGPVKRLAVDATLRA AAPYQKLRREKDISGTRKVFVEKTDMRAKRMARKAGALVIFVVDASGSMALNRMQNAKGAALKL LAESYTSRDQVSIIPFRGDAAEVLLPPSRSIAMARNRLERLPCGGGSPLAHGLTTAVRVGLNAE KSGDVGRIMIVAITDGRANITLKRSTDPESIAPDAPRPTSKELKEGIKTALLLGAVDREIGGIA ISGRRGTAKTVMARGLHEILPPIEVVVGSISNADPACPDEWEDDLDERIEYNADNTIKTEIVKS PFIQIPLGVTEDRLIGSVDVEESVKRGTTVFQPGLLAEAHRGVLYVDEINLLDEGISNLLLNVL TDGVNIVEREGISFRHPCKPLLIATYNPEEGAVREHLLDRVAINLSADLPMSFEDRVAAVGIAT QFQERCNEVFRMVNEETETAKTQIILAREYLKDVKISREQLKYLVLEAVRGGVQGHRAELYAAR VAKCLAAIEGREKVTIDDLRKAVELVILPRSSLDETPPEQQNQPPPPPPPPQNSESGEEENEEE QEEEEEDESNEENENEQQQDQIPEEFIFDAEGGLVDEKLLFFAQQAQKRRGKAGRAKNVIFSED RGRYIKPMLPKGPVKRLAVDATLRAAAPYQKLRREKDISGTRKVFVEKTDMRAKRMARKAGALV IFVVDASGSMALNRMQNAKGAALKLLAESYTSRDQVSIIPFRGDAAEVLLPPSRSIAMARNRLE RLPCGGGSPLAHGLTTAVRVGLNAEKSGDVGRIMIVAITDGRANITLKRSTDPESIAPDAPRPT SKELK(+)
Sponge-miRNAs	ath-miR5021
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017;Chen et al., 2017a

circRNA

Detail information of AT1G08520_circ_g.5

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