Detail information of AT1G08520_circ_g.4


General Information
CircRNA Name AT1G08520_circ_g.4
ID in PlantcircBase ath_circ_001404
Alias 1:2697015-2699920
Organism Arabidpsis thaliana
Position chr1: 2697015-2699920  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT1G08520
Parent gene annotation Mg-protoporphyrin IX chelatase
Parent gene strand +
Alternative splicing AT1G08520_circ_g.1 AT1G08520_circ_g.2 AT1G08520_circ_g.3 AT1G08520_circ_g.5 AT1G08520_circ_g.6 AT1G08520_circ_g.7 AT1G08520_circ_g.8 AT1G08520_circ_g.9 AT1G08520_circ_g.10 AT1G08520_circ_g.11 AT1G08520_circ_g.12 AT1G08520_circ_g.13 AT1G08520_circ_g.14
Support reads 2/1
Tissues seedling
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT1G08520.1:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTGGTTGATGCAAGTGGCAGTATGGCATTGAATCGTATGCAAAACGCCAAAGGTGCTGCACTC
AAACTACTGGCAGAGAGCTATACTAGCAGGGATCAGgaaggcataaaaactgctcttttacttg
gcgcggttgatcgtgaaatcggagggattgccatttcaggtcgtagaggcactgcaaaaacagt
catggcgc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1509
Transcript exons: 2697015-2697193,2697283-2697367,2697453-2697769,2697872-
2697995,2698111-2698203,2698627-2698722,2698971-2699114,
2699194-2699400,2699467-2699622,2699813-2699920
GAAGGCATAAAAACTGCTCTTTTACTTGGCGCGGTTGATCGTGAAATCGGAGGGATTGCCATTT
CAGGTCGTAGAGGCACTGCAAAAACAGTCATGGCGCGAGGGCTTCATGAAATCCTCCCTCCTAT
TGAAGTTGTTGTAGGCTCAATATCAAATGCTGACCCAGCTTGTCCAGATGAGTGGGAAGATGAC
TTAGATGAGCGCATAGAGTACAATGCTGACAATACCATTAAGACTGAGATTGTCAAATCTCCTT
TCATTCAGATTCCACTAGGAGTTACAGAAGACAGACTCATTGGGTCTGTTGATGTTGAGGAGTC
TGTGAAAAGGGGGACAACTGTTTTCCAACCTGGTCTTTTGGCTGAAGCCCATAGAGGAGTGTTG
TATGTTGATGAAATAAATCTCTTAGATGAGGGAATTAGTAATTTGCTTCTCAATGTATTGACGG
ATGGTGTTAATATAGTTGAAAGAGAAGGAATCAGCTTTAGGCACCCGTGCAAACCACTTTTAAT
TGCAACCTATAACCCTGAAGAAGGTGCTGTTCGAGAGCACTTGCTAGACCGTGTTGCCATTAAT
TTAAGTGCAGACCTACCTATGAGTTTTGAAGATCGTGTCGCAGCAGTTGGAATTGCCACACAGT
TTCAGGAACGCTGTAATGAGGTTTTTAGAATGGTAAATGAAGAGACAGAAACAGCAAAGACGCA
GATTATATTGGCTAGAGAATATTTGAAAGATGTCAAGATAAGTAGAGAGCAATTGAAGTATCTG
GTTTTGGAAGCTGTCCGAGGTGGTGTCCAGGGACACCGCGCCGAATTGTATGCAGCTCGTGTGG
CGAAGTGTTTAGCTGCAATTGAAGGACGAGAAAAAGTCACAATCGATGACCTCAGAAAGGCCGT
TGAGCTGGTCATTCTTCCTCGTTCATCACTAGATGAGACTCCACCTGAACAACAAAACCAACCA
CCACCTCCTCCACCTCCTCCACAAAATAGCGAATCTGGAGAAGAAGAAAATGAAGAAGAACAAG
AAGAAGAAGAAGAGGATGAAAGCAATGAAGAAAATGAAAATGAGCAGCAACAGGACCAAATACC
TGAAGAGTTTATATTTGACGCTGAGGGCGGTCTGGTGGATGAGAAACTCCTCTTCTTTGCTCAA
CAAGCCCAGAAACGTCGGGGGAAAGCTGGCAGGGCGAAGAATGTCATATTCTCAGAAGATAGAG
GACGCTACATAAAGCCAATGCTTCCAAAGGGTCCAGTAAAAAGATTAGCTGTGGATGCAACCCT
TAGAGCAGCTGCACCATACCAGAAATTGCGCAGAGAGAAGGATATCTCAGGAACTAGGAAAGTC
TTTGTTGAGAAGACAGATATGAGGGCCAAAAGAATGGCAAGGAAAGCTGGAGCCCTGGTTATCT
TTGTGGTTGATGCAAGTGGCAGTATGGCATTGAATCGTATGCAAAACGCCAAAGGTGCTGCACT
CAAACTACTGGCAGAGAGCTATACTAGCAGGGATCAG

Genomic sequence GAAGGCATAAAAACTGCTCTTTTACTTGGCGCGGTTGATCGTGAAATCGGAGGGATTGCCATTT
CAGGTCGTAGAGGCACTGCAAAAACAGTCATGGCGCGAGGGCTTCATGAAATCCTCCCTCCTAT
TGAAGTTGTTGTAGGCTCAATATCAAATGCTGACCCAGCTTGTCCAGATGAGTAAGATTCTTAC
AATCTGAGAAAGAAATTGCTTTTCTTCTTCTTTTAATTCTTACACTGTTGGCTTGTACCTTTTG
TGATATATGTAGGTGGGAAGATGACTTAGATGAGCGCATAGAGTACAATGCTGACAATACCATT
AAGACTGAGATTGTCAAATCTCCTTTCATTCAGGTACATTTAGTTTTAGGAGGCATTACAATTT
TTCTGAAATTGTTTTTCTTTTTACTTAGGTTTTCCTGTCGTTTATGTCACACAGATTCCACTAG
GAGTTACAGAAGACAGACTCATTGGGTCTGTTGATGTTGAGGAGTCTGTGAAAAGGGGGACAAC
TGTTTTCCAACCTGGTCTTTTGGCTGAAGCCCATAGAGGAGTGTTGTATGTTGATGAAATAAAT
CTCTTAGATGAGGGAATTAGTAATTTGCTTCTCAATGTATTGACGGATGGTGTTAATATAGTTG
AAAGAGAAGGAATCAGCTTTAGGCACCCGTGCAAACCACTTTTAATTGCAACCTATAACCCTGA
AGAAGGTGCTGTTCGAGAGCACTTGCTAGACCGTGTTGCCATTAATTTAAGGTACTACTGGAGT
TTATAAATCAAGTGTGATAAATATTGCCTGTTTCTTTTGGGTAATTCCCATTTCTTTCTCTTTT
TACATCACGATGTTAACCTTTGCAGTGCAGACCTACCTATGAGTTTTGAAGATCGTGTCGCAGC
AGTTGGAATTGCCACACAGTTTCAGGAACGCTGTAATGAGGTTTTTAGAATGGTAAATGAAGAG
ACAGAAACAGCAAAGACGCAGGTATCTTCAAATGAATTAAGAAAAAAAGGGCCTCATTAGTAAA
AATTTGATGGGATGCTATGCTTCTCATCCCACTTTTCTCGATCATAATCCAGTGCATTTTCTCT
GACTTTAGATTATATTGGCTAGAGAATATTTGAAAGATGTCAAGATAAGTAGAGAGCAATTGAA
GTATCTGGTTTTGGAAGCTGTCCGAGGTGGTGTCCAGGTATTGAGCAAAAATTCTGAAGTAATT
TTTTGTTAATGGAAGAAATACACTTAGTAACATATTCCTGGAAGAAAAAGGATAAACACGAAAA
GAAAGGACAAGATGCATGCAATGATGCAACATAATGTCACGATTATAGACTTCAACTAGTATAG
GGCTCAAGAAATGGCTCACCACAGGCAGAAAGATACATCTAGATAGAGTTGTTTTGATTTAGAA
ACAACGCTGGAAAAAGAAGGGCCTGGCATCAAATGCTTTTGTTGCGCTGTTGATTGTAATATTT
CACCAAGTTATGATCATATCACTATAGTTATATTTCTGCGTTTGGTTTACTTGGTAGTTACTTC
TCATGGCGTATCTTTTGTCGATGATTACCTGGAATCGTTTAATACTCCTTTCCCAAATAACAAA
TTTATGATACAGGGACACCGCGCCGAATTGTATGCAGCTCGTGTGGCGAAGTGTTTAGCTGCAA
TTGAAGGACGAGAAAAAGTCACAATCGATGACCTCAGAAAGGCCGTAAGTACTCTTCTCTAGCT
CATTCATTTTTGTTTTCTTTCCCAGAACGATCAAGCAAGTCATAAACTTATAGAATTAGTCATC
CTACGTTTACTTTCACTTTCCTTGTATTGTCTTTGTCTATAATTGAACATCTTAATAGAAATTT
TTGATTAGCAATGTAGAATGACGCTCTATAATGATTTGGATGGAGTATTTATGATATCCTCTAG
TTATTGATTAGCAAATGTGGTCCATTTTTTCAATAGGTTGAGCTGGTCATTCTTCCTCGTTCAT
CACTAGATGAGACTCCACCTGAACAACAAAACCAACCACCACCTCCTCCACCTCCTCCACAAAA
TAGCGAATCTGGAGAAGAAGAAAATGAAGAAGAACAAGAAGAAGAAGAAGAGGTCAGTGGATGC
AGTACACATTATTCTCTCGTTGAACACACGTTCAAGGTTCTAAAGTAGAAATCATTAACCAATG
TAGGATGAAAGCAATGAAGAAAATGAAAATGAGCAGCAACAGGACCAAATACCTGAAGAGTTTA
TATTTGACGCTGAGGGCGGTCTGGTGGATGAGAAACTCCTCTTCTTTGCTCAACAAGCCCAGAA
ACGTCGGGGGAAAGCTGGCAGGGCGAAGAATGTCATATTCTCAGAAGATAGAGGACGCTACATA
AAGCCAATGCTTCCAAAGGTTTGCCCTTAACAAATTCTCAGGCTCCCAAACATGCATAGTCCTT
AACAAATTTTACTTTGATAGGGTCCAGTAAAAAGATTAGCTGTGGATGCAACCCTTAGAGCAGC
TGCACCATACCAGAAATTGCGCAGAGAGAAGGATATCTCAGGAACTAGGAAAGTCTTTGTTGAG
AAGACAGATATGAGGGCCAAAAGAATGGCAAGGAAAGCTGGAGCCCTGGTACTGAACCTTGTCC
ATACATTCTTCTAAAAGATTGTATATAAACAGTTTCCTTGATACAACATTATTCTCACTTTATA
CTTTAAACAGATGTTTGGCATGATAAATTTGACAGTTTCCTTGACACAAGCTTCAGTGAAAACA
TAGATAATATCTGATTACGCTTCTGTTTACCATTGTTGTATGGCAGGTTATCTTTGTGGTTGAT
GCAAGTGGCAGTATGGCATTGAATCGTATGCAAAACGCCAAAGGTGCTGCACTCAAACTACTGG
CAGAGAGCTATACTAGCAGGGATCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.242923125
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs ath-miR5021
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020