Detail information of Os06g0259000_circ_igg.6


General Information
CircRNA Name Os06g0259000_circ_igg.6
ID in PlantcircBase osa_circ_030470
Alias NA
Organism Oryza sativa
Position chr6: 8321644-8322555  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os06g0259000_circ_igg.1 Os06g0259000_circ_g.1 Os06g0259000_circ_g.2 Os06g0259000_circ_g.3 Os06g0259000_circ_g.4 Os06g0259000_circ_g.5
Support reads 1
Tissues root
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGAGCCATTGGATAAGTGAAGTCCAGTACTGCGGGTGGCAAGTTCACGGAAAGAATATCCACA
GGAGAATAGCGGAAGACAGCAACCATGCTTCCATACatcatacttcttccattcaactctaatc
aaatccttaagatcaataacatgtttaggcaagcctgttttcatgctcatgttttgggctgaaa
ctatgttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATCATACTTCTTCCATTCAACTCTAATCAAATCCTTAAGATCAATAACATGTTTAGGCAAGCCT
GTTTTCATGCTCATGTTTTGGGCTGAAACTATGTTTTCAATTGAGTCAAGTTTGTCGAATATCT
CCTTGTAAAAGTACTCCTTCCTGCTGGCTACCTGCAAGTAAAGCCAAATAATTTGAATAGGTGA
ACAGATCACACACGCGCAAAAAAAAATGTTAATCTAAAATTTTAATGGTTTGTCTGTTCTGGCT
TAACTTTATTATCTACTCCCTCCGTCCCATTTTAAGTGCAACCATAAGTTTCCGTGCCCAACTT
TGATCGTCCGTCTTATTTGAAAATTTTTTATAATTAGCATTTTTGTTGTTATGAGATGATAAAA
CATAAATAGTACTTTACTCGTGACTTATGTTTTTAATTTTTTTTAAAAAAAAATTTCAAATAAG
ATGAACGGTCAAAGTTGAGCGCGGAAAACCATGGCTGCACTTAAAATGGGACAGAGGGAGTAAG
AAACTAATTTTGGTGGCTTATGGTCATCAATCAATAATCTAAGTTTGGTCTGCTTGTTATAGAA
TACACAGATTGGTAAAATTAAAAACATTAGCTTATATGGGAGTTGTGATAGAATTAGAAAAAGG
TTGAGAAACCAAAAGAACCACTATTCCACATCATATTGCTTTAGGTGGGATTCAGCTGCTGGAA
AATCTAGTCTGTTTTCATCCAGAAACTAGACCAGATAGGCCCTAAAGAAAAAAAAACAAAACTA
AATGTAAGCGAACATACATCAGCAGCATCTTTGATGATCCAATCTTGAGCCATTGGATAAGTGA
AGTCCAGTACTGCGGGTGGCAAGTTCACGGAAAGAATATCCACAGGAGAATAGCGGAAGACAGC
AACCATGCTTCCATAC
Conservation Information
Conserved circRNAs NA
PMCS 0.234893988
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017