Detail information of Os06g0259000_circ_g.3


General Information
CircRNA Name Os06g0259000_circ_g.3
ID in PlantcircBase osa_circ_030467
Alias Os_ciR4947
Organism Oryza sativa
Position chr6: 8321148-8321304  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os06g0259000
Parent gene annotation Hypothetical conserved gene. (Os06t0259000-01)
Parent gene strand -
Alternative splicing Os06g0259000_circ_igg.1 Os06g0259000_circ_g.1 Os06g0259000_circ_g.2 Os06g0259000_circ_g.4 Os06g0259000_circ_g.5 Os06g0259000_circ_igg.6
Support reads 4
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os06t0259000-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCAGCCACCGTCAATGAACTTGACTGAGTATGTTCTAGTGAATTCTCCCAATTCTCATGTGTA
CCAGGAATCTCAACctttaatgtcggttttcaacccaaaatgtgtcacaattgtgtcaatttgg
tctcccctgatcaatggttttatactatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTAATGTCGGTTTTCAACCCAAAATGTGTCACAATTGTGTCAATTTGGTCTCCCCTGATCAA
TGGTTTTATACTATTTGCAGCCACCGTCAATGAACTTGACTGAGTATGTTCTAGTGAATTCTCC
CAATTCTCATGTGTACCAGGAATCTCAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.230721868
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015