Detail information of Os06g0259000_circ_igg.1


General Information
CircRNA Name Os06g0259000_circ_igg.1
ID in PlantcircBase osa_circ_030465
Alias NA
Organism Oryza sativa
Position chr6: 8319721-8322555  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os06g0259000_circ_g.1 Os06g0259000_circ_g.2 Os06g0259000_circ_g.3 Os06g0259000_circ_g.4 Os06g0259000_circ_g.5 Os06g0259000_circ_igg.6
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGAGCCATTGGATAAGTGAAGTCCAGTACTGCGGGTGGCAAGTTCACGGAAAGAATATCCACA
GGAGAATAGCGGAAGACAGCAACCATGCTTCCATACcgccagaaaagaagtatcattccagaca
gctcgctccaaccttcgttttgctttgcttccgagaaaaatgggctttgtatgaagtgtctcta
atagattc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGCCAGAAAAGAAGTATCATTCCAGACAGCTCGCTCCAACCTTCGTTTTGCTTTGCTTCCGAGA
AAAATGGGCTTTGTATGAAGTGTCTCTAATAGATTCAGATCTAAGAGAACTTTGTTGTTTCCTG
ATGTATCAGGATTGTAACGGGAACGCAAAGAGCCTTTCAGGTCATATATTCTTGATATCTTCTT
CTTGTAAAAAAGATTTTCCATGACCATTACATCCAACTTTAGTTCCTTGCCATCTCTCAAGTTC
CTGGCAGCAACCTAGTCAAAAATACGTAGCGGTAAATTTCACATGTTTCAATCTCACATCATCT
GACAGACACATGAATATAACAATAGAGAATCACAAACCTGGTAAAGACCAAGAACTTTAGCAAG
GCACGTGGGGCTTCCTGAAGATACAGATTCTGTTAAATATTTGAAGTACTCAGCTGCATAGTCC
TCAAATGAATCTAGTTCCGTTCGGGTCACTTGCTTTATGACAAATCTGTCATCTAGTGTTTTGG
CGAAGTATACATTACTCTTGCCACCTTGAGCACTCCATCTCTTGCATCGACTCAAAGAACGAAT
GTAGTAAAGCTCGTCTGGACAGCACTTTCTTCTGATTGCATCAAATTGCTTTGCAAAATAACAT
GTTACAGAAAATTTAGCTTTATCCACAGAAATTGAATCGTCATCCTCAAAAGAAACTGTCAAAT
GAATATCCTTGGAGTCATTATTTCCAGTTCGAGGTTGGTCAGAACCATAGCTCCACGTGGATAC
ATCTAATGAACTCCTAGAAGAGGAATCCTGATCCAAAGAATTTCCAACACTAAATCTGCCCAAG
TCATTTTGCTGGTCCAGCAACGGCAACATGAATTTATGATAATCAGGAACAGTCATGGCATGGG
CTATCATGCTGGATGGCTCATCATCGTAAATTGGAACAACAACATCTCCAGCATTTTGAAGAAG
CAAACGACCTTCACCATGCATTATATCAGGAACTGATAGCTCAGTTTTGAATGTCGGGGACAAA
CCCCTGCCTGTTCTCTCAAGAGCTTTTGGAGGCTTTTGAGAATAAGCTCTTCTAATGATTCCGT
CTGAGCCATCTACAGGTGATAACCTATTTTTGAAATTGATGGCAGAATCAAATGAATTGATTCT
GATTGGTGCAATAACTCTCTGGTATGAGGGATCATCCACCAGAGCAGCAGGTACAACTGGAAGT
GCCTCAATGCTACACTTTGATGGGTCATTAGCAAGCTGACTAGAGCCGGTCCATGCTAAGTCAA
TTCTATCAGAAAGGTTGGTTGCAGAAGATCGTGATCTCTCAAATGTTTTTTCAAGCTCATCAGT
CAGTATCCCATCATTCGGTCGTTCAGATGGGCCTGGAACAACTGAACTGGAATAGTCTTCAGCA
GACTGCGGAGGTACTTCACCTTTAATGTCGGTTTTCAACCCAAAATGTGTCACAATTGTGTCAA
TTTGGTCTCCCCTGATCAATGGTTTTATACTATTTGCAGCCACCGTCAATGAACTTGACTGAGT
ATGTTCTAGTGAATTCTCCCAATTCTCATGTGTACCAGGAATCTCAACCTTTGATTTTTCTACA
AAACGTTCAGGAATCTTATCAAGACACTGCACGTCAGTTGGCACAGTATGACAGTTTTCCTTGG
TAAGTGCCTGCATCATGTACAGTCTACGATCCCATATATGTGCATCAACTATAAGCTCTCTCCT
CAGGCGATTGAGCTCAAGAATATCTATAGCCAGTTCAAGTGTATTCAGGTTTTCTGTGCTAGCA
AACCTTGACAATACCTGAAAAATAATTTTGAACAGTCATCATAACAAATCAAACCTCCATGACA
GCATTTAGATAGTAACACATTGTACCGCTTAACAGAAACAATAAAACAATCTAGCAGTTAAACT
TACATCATACTTCTTCCATTCAACTCTAATCAAATCCTTAAGATCAATAACATGTTTAGGCAAG
CCTGTTTTCATGCTCATGTTTTGGGCTGAAACTATGTTTTCAATTGAGTCAAGTTTGTCGAATA
TCTCCTTGTAAAAGTACTCCTTCCTGCTGGCTACCTGCAAGTAAAGCCAAATAATTTGAATAGG
TGAACAGATCACACACGCGCAAAAAAAAATGTTAATCTAAAATTTTAATGGTTTGTCTGTTCTG
GCTTAACTTTATTATCTACTCCCTCCGTCCCATTTTAAGTGCAACCATAAGTTTCCGTGCCCAA
CTTTGATCGTCCGTCTTATTTGAAAATTTTTTATAATTAGCATTTTTGTTGTTATGAGATGATA
AAACATAAATAGTACTTTACTCGTGACTTATGTTTTTAATTTTTTTTAAAAAAAAATTTCAAAT
AAGATGAACGGTCAAAGTTGAGCGCGGAAAACCATGGCTGCACTTAAAATGGGACAGAGGGAGT
AAGAAACTAATTTTGGTGGCTTATGGTCATCAATCAATAATCTAAGTTTGGTCTGCTTGTTATA
GAATACACAGATTGGTAAAATTAAAAACATTAGCTTATATGGGAGTTGTGATAGAATTAGAAAA
AGGTTGAGAAACCAAAAGAACCACTATTCCACATCATATTGCTTTAGGTGGGATTCAGCTGCTG
GAAAATCTAGTCTGTTTTCATCCAGAAACTAGACCAGATAGGCCCTAAAGAAAAAAAAACAAAA
CTAAATGTAAGCGAACATACATCAGCAGCATCTTTGATGATCCAATCTTGAGCCATTGGATAAG
TGAAGTCCAGTACTGCGGGTGGCAAGTTCACGGAAAGAATATCCACAGGAGAATAGCGGAAGAC
AGCAACCATGCTTCCATAC
Conservation Information
Conserved circRNAs NA
PMCS 0.174089491
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017