Detail information of BGIOSGA001731_circ_g.18


General Information
CircRNA Name BGIOSGA001731_circ_g.18
ID in PlantcircBase osi_circ_009358
Alias Chr01:13413207_13414351(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 14572979-14574123  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA001731
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA001731_circ_g.12 BGIOSGA001731_circ_g.13 BGIOSGA001731_circ_g.14 BGIOSGA001731_circ_g.15 BGIOSGA001731_circ_g.16 BGIOSGA001731_circ_g.17 BGIOSGA001731_circ_g.19 BGIOSGA001731_circ_g.20 BGIOSGA001731_circ_g.21 BGIOSGA001731_circ_g.22 BGIOSGA001731_circ_g.23 BGIOSGA001731_circ_g.24 BGIOSGA001731_circ_g.25 BGIOSGA001731_circ_g.26 BGIOSGA001731_circ_g.27 BGIOSGA001731_circ_g.28 BGIOSGA001731_circ_g.29
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA001731-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAACGACACAGGACAGTACCTCAAGGAAGTCAATATTTACATGTCCTGTGCCCCGATCATCCCA
TTTCCCTCCATCAGTCAAACGGTATACTTTCACACGccatatgtatgagcacccagcagcttcc
tgaaagctcaacgctagttctgttgctacttctggatccctccatgagatgattgtatctaata
aagaaaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCATATGTATGAGCACCCAGCAGCTTCCTGAAAGCTCAACGCTAGTTCTGTTGCTACTTCTGGA
TCCCTCCATGAGATGATTGTATCTAATAAAGAAAATTGTTACAGGAAGTTATTTATATATATGA
ATGGTTAACTTGTAAAAAAAACAAGTTTAGTAGTTCACCTTCTTGCTTTCTGTAGATATCTTCA
GAAGTAATGTTGTGCATGAGCAATGTTTCATTGTCTTCTTCATCCAAAACAGTCAAACCAAGTT
CTTTAGAATCCTGGAATCGACCCCGAGAAAAGGTGTGTGTAAGCTCCAAAAAAGTTAAGGTAAC
ACACTAACAGAACACCATATTACCATAGAGTAGGACTGGTTATCAACTTCATGTTCTAACTCCA
GCTCATGTATTTAAATATAAATGGACATGTCTTACAGATCTTAATGTTCTATAATCAACATTGC
TAGGGTGTGTAAACAAGGTAACTGTAGCTCAAACATAATACCCAATTTGTGGTGGATTGTTCCA
CCTGCAGATGTGGGTAAGCTTATTTCCGTAGTTTAAATAGTTTATTAGTTTGGACGGCTTATGA
ACTTAGAAGAATCAGCAAATCCAAGTTAACACCAATCAACGAAGCAAGGACTAAAGCTCAACTA
ATATGCTAATGTAACCTCCCCTGGTTTTGAGTGGATTTTCACAAATTTGGACCTTGCAGGGTTG
CGGTAGTACCATGAGATGAATCTAAGCCATGTGTGGCTTCTAATGTATAAGGTTACACAAAGCA
GAAAATTATTGGCATAAAATAGGCTACTATTTCCACTAGTTTTAACATAAATATAAACACTTTG
ACCAACAAGGAAGTATAGTGATCCACAACTTTTGTCATTGAATAAAACTAGAAAAGGTGTTAAA
CAGTGTAGCTGATCATTTTATAATGGCATGAGGAATGACCCACAGCATGTTGATAAAGGATAAA
CAGAAAACTAAAAGTAGAGTTGCATAAGAGTAAACTAACAATGCTCGCTGGACACTTGTTTGAC
AATAATATATAGTAGAACCACTAACGACACAGGACAGTACCTCAAGGAAGTCAATATTTACATG
TCCTGTGCCCCGATCATCCCATTTCCCTCCATCAGTCAAACGGTATACTTTCACACG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021