Detail information of BGIOSGA001731_circ_g.16


General Information
CircRNA Name BGIOSGA001731_circ_g.16
ID in PlantcircBase osi_circ_009356
Alias Chr01:13413067_13413472(MH63RS2), Chr01:13413067_13413472(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 14572839-14573244  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRI2
Parent gene BGIOSGA001731
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA001731_circ_g.12 BGIOSGA001731_circ_g.13 BGIOSGA001731_circ_g.14 BGIOSGA001731_circ_g.15 BGIOSGA001731_circ_g.17 BGIOSGA001731_circ_g.18 BGIOSGA001731_circ_g.19 BGIOSGA001731_circ_g.20 BGIOSGA001731_circ_g.21 BGIOSGA001731_circ_g.22 BGIOSGA001731_circ_g.23 BGIOSGA001731_circ_g.24 BGIOSGA001731_circ_g.25 BGIOSGA001731_circ_g.26 BGIOSGA001731_circ_g.27 BGIOSGA001731_circ_g.28 BGIOSGA001731_circ_g.29
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-CA
Number of exons covered BGIOSGA001731-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTCTTGCTTTCTGTAGATATCTTCAGAAGTAATGTTGTGCATGAGCAATGTTTCATTGTCTTC
TTCATCCAAAACAGTCAAACCAAGTTCTTTAGAATCccaccaaggttattaaactgaatgtttc
tctgaatgtcacatatgttgtccctgcagagaaccaccaaaagccaatgatacaaaataagata
tcagtgca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCACCAAGGTTATTAAACTGAATGTTTCTCTGAATGTCACATATGTTGTCCCTGCAGAGAACCA
CCAAAAGCCAATGATACAAAATAAGATATCAGTGCATAGTTGAAGGAAATGGTAATTACTAATT
AGATCAGCAATACCATATGTATGAGCACCCAGCAGCTTCCTGAAAGCTCAACGCTAGTTCTGTT
GCTACTTCTGGATCCCTCCATGAGATGATTGTATCTAATAAAGAAAATTGTTACAGGAAGTTAT
TTATATATATGAATGGTTAACTTGTAAAAAAAACAAGTTTAGTAGTTCACCTTCTTGCTTTCTG
TAGATATCTTCAGAAGTAATGTTGTGCATGAGCAATGTTTCATTGTCTTCTTCATCCAAAACAG
TCAAACCAAGTTCTTTAGAATC
Conservation Information
Conserved circRNAs osa_circ_001629
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021