Detail information of BGIOSGA001731_circ_g.17


General Information
CircRNA Name BGIOSGA001731_circ_g.17
ID in PlantcircBase osi_circ_009357
Alias Chr01:13199962_13201246(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr1: 14572839-14574123  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA001731
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA001731_circ_g.12 BGIOSGA001731_circ_g.13 BGIOSGA001731_circ_g.14 BGIOSGA001731_circ_g.15 BGIOSGA001731_circ_g.16 BGIOSGA001731_circ_g.18 BGIOSGA001731_circ_g.19 BGIOSGA001731_circ_g.20 BGIOSGA001731_circ_g.21 BGIOSGA001731_circ_g.22 BGIOSGA001731_circ_g.23 BGIOSGA001731_circ_g.24 BGIOSGA001731_circ_g.25 BGIOSGA001731_circ_g.26 BGIOSGA001731_circ_g.27 BGIOSGA001731_circ_g.28 BGIOSGA001731_circ_g.29
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-CA
Number of exons covered BGIOSGA001731-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAACGACACAGGACAGTACCTCAAGGAAGTCAATATTTACATGTCCTGTGCCCCGATCATCCCA
TTTCCCTCCATCAGTCAAACGGTATACTTTCACACGccaccaaggttattaaactgaatgtttc
tctgaatgtcacatatgttgtccctgcagagaaccaccaaaagccaatgatacaaaataagata
tcagtgca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCACCAAGGTTATTAAACTGAATGTTTCTCTGAATGTCACATATGTTGTCCCTGCAGAGAACCA
CCAAAAGCCAATGATACAAAATAAGATATCAGTGCATAGTTGAAGGAAATGGTAATTACTAATT
AGATCAGCAATACCATATGTATGAGCACCCAGCAGCTTCCTGAAAGCTCAACGCTAGTTCTGTT
GCTACTTCTGGATCCCTCCATGAGATGATTGTATCTAATAAAGAAAATTGTTACAGGAAGTTAT
TTATATATATGAATGGTTAACTTGTAAAAAAAACAAGTTTAGTAGTTCACCTTCTTGCTTTCTG
TAGATATCTTCAGAAGTAATGTTGTGCATGAGCAATGTTTCATTGTCTTCTTCATCCAAAACAG
TCAAACCAAGTTCTTTAGAATCCTGGAATCGACCCCGAGAAAAGGTGTGTGTAAGCTCCAAAAA
AGTTAAGGTAACACACTAACAGAACACCATATTACCATAGAGTAGGACTGGTTATCAACTTCAT
GTTCTAACTCCAGCTCATGTATTTAAATATAAATGGACATGTCTTACAGATCTTAATGTTCTAT
AATCAACATTGCTAGGGTGTGTAAACAAGGTAACTGTAGCTCAAACATAATACCCAATTTGTGG
TGGATTGTTCCACCTGCAGATGTGGGTAAGCTTATTTCCGTAGTTTAAATAGTTTATTAGTTTG
GACGGCTTATGAACTTAGAAGAATCAGCAAATCCAAGTTAACACCAATCAACGAAGCAAGGACT
AAAGCTCAACTAATATGCTAATGTAACCTCCCCTGGTTTTGAGTGGATTTTCACAAATTTGGAC
CTTGCAGGGTTGCGGTAGTACCATGAGATGAATCTAAGCCATGTGTGGCTTCTAATGTATAAGG
TTACACAAAGCAGAAAATTATTGGCATAAAATAGGCTACTATTTCCACTAGTTTTAACATAAAT
ATAAACACTTTGACCAACAAGGAAGTATAGTGATCCACAACTTTTGTCATTGAATAAAACTAGA
AAAGGTGTTAAACAGTGTAGCTGATCATTTTATAATGGCATGAGGAATGACCCACAGCATGTTG
ATAAAGGATAAACAGAAAACTAAAAGTAGAGTTGCATAAGAGTAAACTAACAATGCTCGCTGGA
CACTTGTTTGACAATAATATATAGTAGAACCACTAACGACACAGGACAGTACCTCAAGGAAGTC
AATATTTACATGTCCTGTGCCCCGATCATCCCATTTCCCTCCATCAGTCAAACGGTATACTTTC
ACACG
Conservation Information
Conserved circRNAs osa_circ_001630
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021