Detail information of Os07g0608900_circ_ag.1


General Information
CircRNA Name Os07g0608900_circ_ag.1
ID in PlantcircBase osa_circ_034720
Alias NA
Organism Oryza sativa
Position chr7: 25045595-25050011  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method circseq_cup
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os07g0608800_circ_ag.1 Os07g0608800_circ_ag.2 Os07g0608800_circ_g.3 Os07g0608800_circ_ag.4 Os07g0608800_circ_g.5 Os07g0608800_circ_g.6 Os07g0608900_circ_ag.2 Os07g0608900_circ_g.1 Os07g0608900_circ_ag.2
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   GG-GT
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGCACCCGGCGCACGTCGCCGCCGTGCAGGGGCACGTCCTCCCCAACGCGCTCGACTCCACCGC
CATCGACTGGGTCAACGCCGCCCTGGTGCCGTCCCCggtgcccgggctgtcgtacatccacgtc
ggccccgtgctccgcctccggtcgccggcggcggaggcgctggggccgacccacgtcctccact
cccgctac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 231
Transcript exons: 25045595-25050011
GGTGCCCGGGCTGTCGTACATCCACGTCGGCCCCGTGCTCCGCCTCCGGTCGCCGGCGGCGGAG
GCGCTGGGTCCGACCCACGTCCTCCACTCCCGCTACGCCACCAAGCCCGACCTGGCGGCGTACG
CGGCGCACCCGGCGCACGTCGCCGCCGTGCAGGGGCACGTCCTCCCCAACGCGCTCGACTCCAC
CGCCATCGACTGGGTCAACGCCGCCCTGGTGCCGTCCCC

Genomic sequence GGTGCCCGGGCTGTCGTACATCCACGTCGGCCCCGTGCTCCGCCTCCGGTCGCCGGCGGCGGAG
GCGCTGGGGCCGACCCACGTCCTCCACTCCCGCTACGCCACCAAGCCCGACCTGGCGGCGTACG
CGGCGCACCCGGCGCACGTCGCCGCCGTGCAGGGGCACGTCCTCCCCAACGCGCTCGACACCAC
CGCCATCGACTGGGTCAACGCCGCGCTCGCGCCGTCCCCGGTCACCCCGGGCTCCGCCGTGCGG
CTCACGCTGGCGAAGGTGAAGGAAGGTGTGGAGGTGCCCCAGCTCGTGGAGAAGGTCGCCGCGG
CGACGGCGGCGGCGGGCGAGGCGAAGGGCGCCAGGGTGAGCTTCGGGGAGAACTTCTCCCCCGC
GCGGGCTAAGGGGTACCAGTTCGGGATGGTGGCGGTGTTCGACAGCGTGGAGGAGCTCGACGCG
GTGGAGGGGGACGGGAAGGTGCAGGAGGCCAAGGCGGCGGTGAGGCCACTGCTCGACGAGGTGC
TCGTGCTGGACTTCGTCGTCGGACCTGCCGCCGTGGAGGCTCCGGCGCCGGCCAACCTCTGAGA
GGTTTGCCTTCGGTTTGGAAACTCTTAGTTGCCTTGTTCAATCGATCGAGAATAATGCAATCCT
TGTGATTGGGTGTGCTGCTGCTGCTGTGGCGTGTGATTGGCAATGGCAATTGATTTTGGAATGA
ATAAGAATTGTACCTGACTACCTGAACTAGGAATTAGGATGGCCGCTCTTGCTTGGATCGTCGT
GTACCAAGAAAGAGCTTGCTGCCTTCAGTGTTCATCTTTCTCTTGTCGCGCTGCCTACAAATGT
GCATGTCAGATAGTCTTGTTAACCACAACTCGGTGCTATGCCTCTCATGCCTCCCCATTAAGCA
TGAAGGAACCACTGACATGCCACTGGACAATCTTTTAGTATCATGCACCCGTAGAAGTATTTTA
GTCTTGCTCCAATTCTGCCTTGTGAAATCCTCATAGGCATGATTTATGGAACATGTGCCTTTGT
GATTGTAGAGTATTATACGCAATAATCGCTGTTGTCGGAATCGGATGTCCGGGTTACTACATTT
TGAGCAGTTTTGATGACTTTGGCCATGTTAAAGTTGAGGAGGTCAGTCCATTCAATAGTACAGA
GGACCTTTTTTTAGTGGTAATAGTGATCTTGCTGAACGCATCAGGTTTGACAGTAATAGTTTTG
GTCATTCATTCCTATTGAGATCGACTATCTTGCTGAATGAAACTGATTACATAATTTCTCATTG
TGATTTTAACAGCTCTAGAATTGTTGCACGTGGTATTGCCCTCGATGACTCTCAGCTTGATGAC
CATTCTGAAAGTGATAGTTCTAGTATAGGCACTGCAGCACAACCATCCCCAATTAGGAACAGTC
CTTCAAGAAGCTTGAGTTTTTCTCATTTGTCAAGGTTGAGAGGCAGAGTTCATACCTTGTGGGA
ATGGGTTCTTCGGAAATGGCCTTCGGTATGAAATTATTCTAATTTGTGTTTGCCATCCTTTTCT
TATAGCAGAAAAACTCTCTTGATTTAGTCATAGGGAAATGTTTCTGTAGAGTTAAGGTTGTAGT
AACACTATGAAAATGCATTTCTTGCCTAACATCTATATAATCTTATGTTTGACACATCATGTAA
ATTTTGGAATGAGTTTGAGGACCAATAAGTTTTGATAGATAGGGTGACGAGTAACAAATGAAGA
GTTCTGTTTCTTAGTACTGCTCAGTGGCTAAAGTCATGAAACCTGAACTTATTGTGAGGCAATT
AGAAAAATTAAATTACCATAATACAACTTATTGGTAAATACCAACCCAGTTTATCATAACATCT
AACAGAACATCTCCAGTGAATTGTGCAATTCACTGTCATATGAGAACTCTATCATACTCTACTC
AATTGAAATTGCTACGTCCATTTCAATCATTTATTTCATTTATGGTAGGATGCAACACCATGAT
ACTATCAAGCCTTAATTAATTGATGGCTTAGTTAGAGTTGGTCTTATATTCTTTTTTTATCACC
TCAATTGAATCTGTAGTAACTGTTTGATATTTGATTACACTTGGACGTTTCCAATTTGTTGCAG
GATTGTATTATCATTTACCAAAGCGAGCAGCTGGCATTCGTTATGTATTCATTGGGAAGCCAAT
GATTCAGAGGCCCAGGTACTCTCCTTTATTTTGCTCATCTAGGAGTACCTTTTATACTACGGCC
GAGTTTAGTTCCAAACTTTTTCTTCAAACCTCCAACTTTTCCATCACATCAAAACTTTTCTACA
CACACAAACTTCTAACTTTTCTGTCACATTGTTCCAATTTCAACCAAACTTCCAATTTTGGCGT
GAACATGAAACATATCATACAAACATTAGACTATGAAACACCTGCAATAAATGAGTTTGAGAAT
GCAGATGATGAGTCTTTTCATGATCTACAGTTTTTTTTGGACATCTTCACATGTTTTACTTCCC
TTTGGGAGCTTAAAATTCTCCAGCAGATCATATTTAACTCATCGGATTTTGCAGGTATCAAATC
TTGGGTATTTTTTTGTTAATTCAGTTATGTATTCTCGGTGCTGAAAGGCTTCGAAGAAGTAATT
TATCAACAATTGCTAGTTCGATTAATCAAATCTCATCTGGAAGCTATCCTTCATCGAGAGGTGG
CACTTTCTTTTTCTGAATTTATGAAACCGGTTTTGGTTTTATGCCAATGCTTTGTGTTTACTTG
TTACATGGGTATAAAATGTTCCAATATTACCTTTGTGAATGGGAAACAGGTCGAGGTGTCACAT
CGAATATTTGGACACATGCATGGAGTATTAAATATATATAAAAAAATTAATTACACAGAATACA
TGTAAATTGCGAGACAAATCTTTTAAGTCTAATTGCTCCATGATTTAACAATATGGTGCTATAG
TAAACATTTGCTAATAACGGATTAATTATGTTTAATAAATTCGTCTCGTAGTTTATAGGCAGAA
CCTGTAATTTGTTTTGTTATTAGTCTTCATCTCATACTTCAAATATTTGTCCGTATATTCAATG
TGACATGCTAAAACTTTTCACCCCTAAACTACACAGGGCCTTTAGGCTGTGTTCGCGGGAGGAT
GTTCCCAACCAGCCGTTAGCGCACGGAAAACGGAACGATCTATTAGCACGTGATTAATTAAGTA
TTAGCTAATTTTTTTTTAAAAAATGGATCAATATGATTTTTTAAGCAACTTTCGTATAAAAACT
TTTTGCAAAAAACATACCGTTTAGCAGTTTGAAAAACATGCGCGCGGAAAACGAGGGAGATGAG
TTGTGAAACTTGGGTAAGAACACACCCTTAATTAATCTCGCGTTAATAGACCGCTCCGTTTTCC
GTGCTAACTGTTCCGGTTGGGAACTGGAAATAGCGAACACAATCTTAGGGTGTGTTTAGTTCAC
GCCAAAATTGAAAGTTTGGTTGAAATTGGAACAATGTGATAGAAAAGTTGAAAGTTTATGTGTG
TAGAAAAATTTTGATGTGATGAAAAAGTTAAAAGTTCGAAGGAAAAGTTTGGAACTAAGTCCTC
AGTAGAGTTGGAGTGTGGCAAAGCAAAAGACCGAACCTGTTTGTCACAGGTGCCACCAACCCTC
TCATCCGGCGGCTGCCCAACAGAGAATCCAGCATGGTTTCTCGGTTTCTCCATCCTTTTCCCAT
TTTGAATGCAATCCACCTCAAATTTCTCTCTCCCGTAACGCCATCCATGACGCCGGCTTTGCTC
TGCCCGTACACAAACAGCCATACTATACTACCAGCAAGTTACTATGGAGTACTTGCAAACCACT
ACTCCATCCATTCCAACTTGCTTCATCTTCATCTTTCCCACCTCCATCACCTCACCAACAGCAC
CAGCGCAGGTCGCTGTCTCCGAAATATCATTTCGTTTTTAATTATCTTTTCCTCCCCTTCGCTA
ATCACCATGATTTGCCTCCGAGCCGCCTTCCCCTTGACCTCCTCCCCTCTCCGCCGCCTCGCCC
TCAAGCCCTCCTCCTCCCGCGCCGCCGCCGCCGCCATGTCGTCCGCCATCGCCGCGCCGGTCGA
GCACATCGTGCTCATCAAGGTCCGCCCGGAGGCGGCGTCGTCGGGCGCCGCCGCGGCGATGGTG
TCATCGCTGCAGGCGCTGTCCACGGCGGTGCCCGGGCTGTCGTACATCCACGTCGGCCCCGTGC
TCCGCCTCCGGTCGCCGGCGGCGGAGGCGCTGGGTCCGACCCACGTCCTCCACTCCCGCTACGC
CACCAAGCCCGACCTGGCGGCGTACGCGGCGCACCCGGCGCACGTCGCCGCCGTGCAGGGGCAC
GTCCTCCCCAACGCGCTCGACTCCACCGCCATCGACTGGGTCAACGCCGCCCTGGTGCCGTCCC
C
Conservation Information
Conserved circRNAs NA
PMCS 0.109856932
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2016