Detail information of Os07g0608800_circ_ag.2


General Information
CircRNA Name Os07g0608800_circ_ag.2
ID in PlantcircBase osa_circ_034715
Alias Os_ciR1406
Organism Oryza sativa
Position chr7: 25042144-25047091  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os07g0608800_circ_ag.1 Os07g0608800_circ_g.3 Os07g0608800_circ_ag.4 Os07g0608800_circ_g.5 Os07g0608800_circ_g.6 Os07g0608900_circ_ag.1 Os07g0608900_circ_ag.2 Os07g0608900_circ_g.1 Os07g0608900_circ_ag.2
Support reads 42
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAGGAACAGTCCTTCAAGAAGCTTGAGTTTTTCTCATTTGTCAAGGTTGAGAGGCAGAGTTCAT
ACCTTGTGGGAATGGGTTCTTCGGAAATGGCCTTCGgattgtattatcatttaccaaagcgagc
agctggcattcgttatgtattcattgggaagccattgaatcagaggcccaggtactctctgttt
ctctgctc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATTGTATTATCATTTACCAAAGCGAGCAGCTGGCATTCGTTATGTATTCATTGGGAAGCCATT
GAATCAGAGGCCCAGGTACTCTCTGTTTCTCTGCTCATCTACTGTTTATACTACATGAAACAAA
TCATACAAACAATGGGCTATGAAACACCAGTAATAAATGAGTTTGAGAATACTGATAATAAGTC
TTTTCATGATCTGTAGTTTTTTTGGACATCTTCACATGTATTACCTCCATTTGAGAGCTTAAAA
TTCTCCAGCAGGTCACATTTAACTCATTGGATTTTGCAGGTATCAAATCTTGGGTATTTTTCTG
TTAATTCAGTTATGTATTCTTGGTGCTGAAAGACTTCGAAGAAGTAATTTATCAACAATAGCTA
GTTCGATTAACCAAATCTCATCTGGAGGCTATCCTTCATCAAGAGGTGGTACACTCTTTTTCTC
AATTTATGAAACCAGTTTTGGTTCTATGTTAATGCTTTGTGTTTACTTGTTTCATGGATATAAA
TAAATGTTCCAATATTACCTTTGTGAATGGCAAAACAGGTCGAGGTGTCCCTGTTCTAAATGAA
GATGGAAATATAATCAGCGACATCCGCCATGGGAAAACTGCAGATTTGGCTACTAGTTCAGAGG
TATTTTTTTCTAGATAAATTCATTGAGATGACTACTATTGTGTAGCACAAAATGTTTAGCTTTG
TGTTGGACGCCAACAGCTTTTAAGATTATCGGTATCAAGCACTTCATGTTATGCAACAGAATTC
TATTTAAAAAAGAAAGCAACAAAGTAAAAAAAATGTTACAATTTAAGATTATGATTGAACTGAA
AATGCTTTTTTACCACTATTCTTATATTGTTTATGTTATTTGATGTATTTTGTGTATGAATATA
ATTCTTCTTTCATATTGTATGTCTAATGTTCAGGCATCCAGTGGTAAGAGCAAATGCACCCTTT
GTCTCAGTACCCGTCAGAATCCCACTGCCACAACCTGTGGCCATGTCTTCTGCTGGTAAGACTC
GTTTTTTGGCCTTTACGGATGCAGCCTGAAATTTTTCTCTCATGCACTCACTTGAATGGTATGG
TAATTCATGACATAACATGCAGGAGTTGCATTATGGAGTGGTGTAATGAGAAGCCTGAATGCCC
CCTATGCAGAACTCCGATTACACATTCGAGTTTGATTTGTATATATCATTCAGATTTCTAGCAA
ATGATTACTAGCAAGGGGTCATATCATTCTCCAGTGGATTCATTAAAATGATACTGAATCCCCA
CATTTTGGCGAGAACTCTTCTTCTGAAGTGTTTTAGTGTACCAAAAGAGGAGAGTAGAAACCAT
CCAATGAGGCTGAAGATCAATGCTGCCATTCAACTGTATTGTAGAGCTCAAATAACAAAACAAT
CAAACAGAACAAAATTTTCATTAGAGCTCAAACGGATACCCATGTATATGTACATTGTAGACAC
AACTTGATTTTGTAGGGTAGAACAGTGGCTGACTGGAATCATTAGAGCAAAATGTATCGACCTG
AAATTCTGCCGGGAAATTTAACTATTTGCCAATATTAGATTCGACAATTATTCAAATGCCCCTC
TTAGATTTGGACTTAATTTTTTGCCCCTCTTAAGAGATGCCTTCTTAACTATTTGCCACTTTTG
TCCACGTGGTATGCCAATGTGGCAACACAGGGTAGAAATCGGTGTGGGACCCACTAGTCAGCCT
CTTCTCTATCCTTCTTCTTTCCCTCTGGTCCGGCGAGGAGCGTGCTCTGCCACAAGCCGGTGCT
GCTCCGGTCTCCATCCTTGTGCGCGGCTGCTCTAATCCACCGCCGCTTTGCCTTCGTCAGTGCC
ACCGCTTCACCTCCTTCGACAGCGCCGCCGCTTTGCCTCCTCCACCACCGCGAGGAGCCCGTCC
GCCGCCGCTACACATCCTCCTCTGCCCCGACCGTTGCTCTGCCTCCTCCACCTCCACGAGGAGC
CCGTCCGCGTCGCTATGCCAGCGCCACCGCTTCGCCTCTTCCACCACCACGAGTAACCCGTCCG
CCGCCGCTACACATCCTCCTTCGCTGGCGCCGCCGCTTCGTCTCGTCCACCTCCGCAAGGAGCC
CATCCGCTGTCGCTACGCCTCCTCCGCCGGCGCCGCCGCTCCGCCTCCTCCACCACCACGAGGA
TGTCCGCCATCGCTGCATCTCCTCCGCCGCCACTGCTCCTTTCCCCAACCACGCCGTCATCGCA
CGCCGGACCGGAGGGAAAGAAGGAGGAGAGAGAGGAGAGGCTGACTTATGGGTCTTACACCAAT
TTCTACCCTATGTTGCCACGTTGGCATGCCACGTGGGCAAAAGTGGCAAATAGTTAAGAATGCA
TCTCTTAAGAGGGGCAAAAAAAAAAGTGCAAATCTAATAGAGGCATTTGAATAATTGTCGAATC
TAATAGTGGCAAATAGTTAAATTTGCTTATCCCCGTATCCCTCTGTATCACGTTCTTTGATTGC
GTTGCGTGACTGGCGTACGAGACATTTGCTTATCTCATACTCCCTCCGTCCTAAAAAAAAGACA
AACCCTGGTTTCCGCGTCCAACGTCTGACCGTTCGTCTTATTTGAAAAAATTATAAAAAAAATT
AAAAAGACAATTCACGCATAAAATATTAATCATGTTTTATCATCTAACAACAATAAAAGTATGA
ATTATAAAAAATTTCATATAAAACGGACAGTCAAAGTTGGATACGGAAACCTAGAATTTGTCTT
TTTTGGGACAGAGGGAGTACTCTACTGTGAGTTCTGCCCACACGCAGTCTGCAATTCTGGCATC
TCTGCAGAAACGCAATGCCTCTCCTCTCGCCTCGTCACTTTGAGCTCAGTAGAATTGGAGTGTG
GCAAAGCAAAAGAGCGAAGCCGTTTGTCACAAGTGCCACCAACCCTCTCGTCCGGCGGCTGCCC
AACAGAATCCACCATGGTTTCTCCATCCTTTTTCCATTTTCAATGCAATCCACCTTAAATTTCT
CTCTCCCGTAACGCCATCCATACCCCGGCATTGCTCTGCCCGTACACAAACTACCACACTAGTC
GCAAGTTAAAACCACTACAAAATCCATTCCAACTTGCCTCATCTCTCCCACCTCCATCACCAAA
CCAGCACAGGTCGCTGTCTCTCTCCGAAATATCATTTCGTTTTTTAATCATCTTTTCCTCCTCT
TCGCTAATCACCATGATTTGCCTCCGAGCCGCCTTCCCCTTGACCTCCTCCTTCTCCTCCTCCC
CTCTCCGCCGCCTCGCCCTCAAGCCCTCCTCCTCCCGCGCCGCCGCCGCCGCCGCCATGTCGTC
CGCCCCCGCCACCGCCATCGCCGCGCCGGTCGAGCACATCGTGCTCATCAAGGTCCGCCCCGAG
GCGGCGGCGTCGGGCGCCGCCGCGGCGATGGTGTCCTCGCTGCAGGCGCTGTCCAGCGTGGTGC
CCGGGCTGTCGTACATCCACGTCGGCCCCGTGCTCCGCCTCCGGTCGCCGGCGGCGGAGGCGCT
GGGGCCGACCCACGTCCTCCACTCCCGCTACGCCACCAAGCCCGACCTGGCGGCGTACGCGGCG
CACCCGGCGCACGTCGCCGCCGTGCAGGGGCACGTCCTCCCCAACGCGCTCGACACCACCGCCA
TCGACTGGGTCAACGCCGCGCTCGCGCCGTCCCCGGTCACCCCGGGCTCCGCCGTGCGGCTCAC
GCTGGCGAAGGTGAAGGAAGGTGTGGAGGTGCCCCAGCTCGTGGAGAAGGTCGCCGCGGCGACG
GCGGCGGCGGGCGAGGCGAAGGGCGCCAGGGTGAGCTTCGGGGAGAACTTCTCCCCCGCGCGGG
CTAAGGGGTACCAGTTCGGGATGGTGGCGGTGTTCGACAGCGTGGAGGAGCTCGACGCGGTGGA
GGGGGACGGGAAGGTGCAGGAGGCCAAGGCGGCGGTGAGGCCACTGCTCGACGAGGTGCTCGTG
CTGGACTTCGTCGTCGGACCTGCCGCCGTGGAGGCTCCGGCGCCGGCCAACCTCTGAGAGGTTT
GCCTTCGGTTTGGAAACTCTTAGTTGCCTTGTTCAATCGATCGAGAATAATGCAATCCTTGTGA
TTGGGTGTGCTGCTGCTGCTGTGGCGTGTGATTGGCAATGGCAATTGATTTTGGAATGAATAAG
AATTGTACCTGACTACCTGAACTAGGAATTAGGATGGCCGCTCTTGCTTGGATCGTCGTGTACC
AAGAAAGAGCTTGCTGCCTTCAGTGTTCATCTTTCTCTTGTCGCGCTGCCTACAAATGTGCATG
TCAGATAGTCTTGTTAACCACAACTCGGTGCTATGCCTCTCATGCCTCCCCATTAAGCATGAAG
GAACCACTGACATGCCACTGGACAATCTTTTAGTATCATGCACCCGTAGAAGTATTTTAGTCTT
GCTCCAATTCTGCCTTGTGAAATCCTCATAGGCATGATTTATGGAACATGTGCCTTTGTGATTG
TAGAGTATTATACGCAATAATCGCTGTTGTCGGAATCGGATGTCCGGGTTACTACATTTTGAGC
AGTTTTGATGACTTTGGCCATGTTAAAGTTGAGGAGGTCAGTCCATTCAATAGTACAGAGGACC
TTTTTTTAGTGGTAATAGTGATCTTGCTGAACGCATCAGGTTTGACAGTAATAGTTTTGGTCAT
TCATTCCTATTGAGATCGACTATCTTGCTGAATGAAACTGATTACATAATTTCTCATTGTGATT
TTAACAGCTCTAGAATTGTTGCACGTGGTATTGCCCTCGATGACTCTCAGCTTGATGACCATTC
TGAAAGTGATAGTTCTAGTATAGGCACTGCAGCACAACCATCCCCAATTAGGAACAGTCCTTCA
AGAAGCTTGAGTTTTTCTCATTTGTCAAGGTTGAGAGGCAGAGTTCATACCTTGTGGGAATGGG
TTCTTCGGAAATGGCCTTCG
Conservation Information
Conserved circRNAs osi_circ_017331
PMCS 1.072218021
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015