Detail information of Os12g0485400_circ_g.5


General Information
CircRNA Name Os12g0485400_circ_g.5
ID in PlantcircBase osa_circ_011494
Alias NA
Organism Oryza sativa
Position chr12: 17959718-17960923  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os12g0485400
Parent gene annotation Similar to Cyclin T1 (Fragment). (Os12t0485400-01)
Parent gene strand +
Alternative splicing Os12g0485400_circ_g.1 Os12g0485400_circ_g.2 Os12g0485400_circ_g.3 Os12g0485400_circ_g.4 Os12g0485400_circ_g.6
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os12t0485400-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTATCTTTTTGGCTGCTAAATTTCTCAAAGTGAAGCTTCCATCTGATGGTGAGAAGGTTTGGT
GGCAGGAGTTTGATGTGACTCCAAGACAGCTGGAAGacaattgccacagtttgcatgttcttgg
ctggaaaagttgaagagacgcctaggcctttgaaagatgttattctggtttcttatgagattat
tcataaaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 463
Transcript exons: 17959718-17959852,17960513-17960688,17960772-17960923
ACAATTGCCACAGTTTGCATGTTCTTGGCTGGAAAAGTTGAAGAGACGCCTAGGCCTTTGAAAG
ATGTTATTCTGGTTTCTTATGAGATTATTCATAAAAAGGATCCTGCTGCTGGTCAGAGAATCAA
GCAGAAGGAAGTATATGATCAACAAAAAGAACTTATTTTACTTGCGGAGCGAGTTGTACTTGCA
ACTCTTGGGTTTGATTTGAATGTGCATCATCCATACAAGCCTTTGGTTGAAGCAATAAGAAAAT
TTAAAGTTGCTCAAAATGCGCTTGCTCAGGTTGCATGGAATTTTGTCAATGATGGGCTGCGTAC
TTCGCTTTGCCTGCAGTTCAAGCCTCATCATATTGCAGCAGGTGCTATCTTTTTGGCTGCTAAA
TTTCTCAAAGTGAAGCTTCCATCTGATGGTGAGAAGGTTTGGTGGCAGGAGTTTGATGTGACTC
CAAGACAGCTGGAAG

Genomic sequence ACAATTGCCACAGTTTGCATGTTCTTGGCTGGAAAAGTTGAAGAGACGCCTAGGCCTTTGAAAG
ATGTTATTCTGGTTTCTTATGAGATTATTCATAAAAAGGATCCTGCTGCTGGTCAGAGAATCAA
GCAGAAGGTAACAATAAACTAGATGCTTCTTTTGCTATATACTTTAATTTTATGAATTTGTTTT
CTTTCTTGCAAAAAAAAATCCCTCTGATCTGCATTTGGCAGCAGGACCATCCGTTTTGCCTGAT
ATTTAGTTTTCTTTGATGTTCTAAGTATTTTGACTGTTCAATTTCCTGGTAAACATTACTGGCT
ATATTGGCAACTATTACCCATCGCCTTTTTGATTTTTTTGCGGCATTTTTGAATCCTAGAATTT
ATCTAATGGAAGAATCAAGAATGTGAGGTTAAATTACATGTAAACAAATTTCAACATCTGACAG
TTATTCATTGTATTATATCATGTTGGTTGTGATTAAGTTAACCATCAAGGCATCTGCCTGTGAT
AATTACTTCCGTCCTGGTTTTACTGCGTGCATATGTAAAAAAAAATGGAAGTAAATAGTCACCA
TTGTATGCTTCTATTCTCAGCTAATGCTTCTTGAAAACAATCCAAGGCTAGCATATAGGGTTAT
AGCGTTTATGACTCCTGATAGTAGTATAGGCTTTTTCCCTGCACGTGATATTTCCTGCTTTGGG
AGATTGTCTGGACGGAGTTATTTTTCTTCCTGCACCAGGCAATGATTTCCACTGGGATGCTTTA
ATGAATGGTCTGTAATTGTCTCTGCAGGAAGTATATGATCAACAAAAAGAACTTATTTTACTTG
CGGAGCGAGTTGTACTTGCAACTCTTGGGTTTGATTTGAATGTGCATCATCCATACAAGCCTTT
GGTTGAAGCAATAAGAAAATTTAAAGTTGCTCAAAATGCGCTTGCTCAGGTTGCATGGAATTTT
GTCAATGATGGGTATGCTATTGATACCCTTATTATCTTTAGAGATATCACTCAATCATGTATAT
AACACGTTAAAAAGGGCGTATATTGTACAGGCTGCGTACTTCGCTTTGCCTGCAGTTCAAGCCT
CATCATATTGCAGCAGGTGCTATCTTTTTGGCTGCTAAATTTCTCAAAGTGAAGCTTCCATCTG
ATGGTGAGAAGGTTTGGTGGCAGGAGTTTGATGTGACTCCAAGACAGCTGGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.317231433
Functional Information
Coding potential Y
Potential coding position 17959737-17959755(+)
17959815-17960851(-)
17959739-17960545(-)
Potential amino acid sequence MFLAGKVEETPRPLKDVILVSYEIIHKKDPAAGQRIKQKEVYDQQKELILLAERVVLATLGFDL
NVHHPYKPLVEAIRKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKL
PSDGEKVWWQEFDVTPRQLEDNCHSLHVLGWKS*(+)
MNNLIRNQNNIFQRPRRLFNFSSQEHANCGNCLPAVLESHQTPATKPSHHQMEASL*(-)
MQTVAIVFQLSWSHIKLLPPNLLTIRWKLHFEKFSSQKDSTCCNMMRLELQAKRSTQPIIDKIP
CNLSKRILSNFKFSYCFNQRLVWMMHIQIKPKSCKYNSLRK*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017