Detail information of Os12g0485400_circ_g.4


General Information
CircRNA Name Os12g0485400_circ_g.4
ID in PlantcircBase osa_circ_011493
Alias NA
Organism Oryza sativa
Position chr12: 17958077-17958344  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os12g0485400
Parent gene annotation Similar to Cyclin T1 (Fragment). (Os12t0485400-01)
Parent gene strand +
Alternative splicing Os12g0485400_circ_g.1 Os12g0485400_circ_g.2 Os12g0485400_circ_g.3 Os12g0485400_circ_g.5 Os12g0485400_circ_g.6
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   TT-GA
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGCGATGAAAACTGCAATATTTTATAGATATAGAAGTTGTGTCGCGGGGAAGTACATACTTTG
ACATTTGCATTTTACGATCACAAGAGCTATGGGGACgtaagtactttcaatgcttggttcgttc
ctccttttgtggttttatggatggctatttctcttttagttagtagcctttatattacaacgac
atatttgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTAAGTACTTTCAATGCTTGGTTCGTTCCTCCTTTTGTGGTTTTATGGATGGCTATTTCTCTTT
TAGTTAGTAGCCTTTATATTACAACGACATATTTGCATTTTTTATCTAGTTCTAAAACATGTTT
AACAAGAAAATGGTTTCCTTCTGTATGGATAGTAATGTAGGAGCGATGAAAACTGCAATATTTT
ATAGATATAGAAGTTGTGTCGCGGGGAAGTACATACTTTGACATTTGCATTTTACGATCACAAG
AGCTATGGGGAC
Conservation Information
Conserved circRNAs NA
PMCS 0.13619403
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017