Detail information of Os12g0485400_circ_g.6


General Information
CircRNA Name Os12g0485400_circ_g.6
ID in PlantcircBase osa_circ_011495
Alias NA
Organism Oryza sativa
Position chr12: 17960513-17960923  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os12g0485400
Parent gene annotation Similar to Cyclin T1 (Fragment). (Os12t0485400-01)
Parent gene strand +
Alternative splicing Os12g0485400_circ_g.1 Os12g0485400_circ_g.2 Os12g0485400_circ_g.3 Os12g0485400_circ_g.4 Os12g0485400_circ_g.5
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os12t0485400-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTATCTTTTTGGCTGCTAAATTTCTCAAAGTGAAGCTTCCATCTGATGGTGAGAAGGTTTGGT
GGCAGGAGTTTGATGTGACTCCAAGACAGCTGGAAGgaagtatatgatcaacaaaaagaactta
ttttacttgcggagcgagttgtacttgcaactcttgggtttgatttgaatgtgcatcatccata
caagcctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAAGTATATGATCAACAAAAAGAACTTATTTTACTTGCGGAGCGAGTTGTACTTGCAACTCTTG
GGTTTGATTTGAATGTGCATCATCCATACAAGCCTTTGGTTGAAGCAATAAGAAAATTTAAAGT
TGCTCAAAATGCGCTTGCTCAGGTTGCATGGAATTTTGTCAATGATGGGTATGCTATTGATACC
CTTATTATCTTTAGAGATATCACTCAATCATGTATATAACACGTTAAAAAGGGCGTATATTGTA
CAGGCTGCGTACTTCGCTTTGCCTGCAGTTCAAGCCTCATCATATTGCAGCAGGTGCTATCTTT
TTGGCTGCTAAATTTCTCAAAGTGAAGCTTCCATCTGATGGTGAGAAGGTTTGGTGGCAGGAGT
TTGATGTGACTCCAAGACAGCTGGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.558457117
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017