Detail information of BGIOSGA015645_circ_igg.2


General Information
CircRNA Name BGIOSGA015645_circ_igg.2
ID in PlantcircBase osi_circ_005307
Alias 4:2733995|2736986
Organism Oryza sativa ssp. indica
Position chr4: 2733995-2736986  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA015645_circ_igg.1 BGIOSGA015645_circ_igg.3
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGTCAAACCTTCAAAAGACTGAGTGAATTTGGAACGTGATAATTGCTCAACGGATCCCCACAG
TTGTGGCGATAAAGCACAGGCTGTCAATTTTAGCACcaggtggtgtttcccttactgaagactt
ccggaagtatgaacagtccctccccttctcagcagaataaggaggagaaaggacatcaaagaga
gcacaagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGGTGGTGTTTCCCTTACTGAAGACTTCCGGAAGTATGAACAGTCCCTCCCCTTCTCAGCAGA
ATAAGGAGGAGAAAGGACATCAAAGAGAGCACAAGGTGTGATCGCTCTGAAAGTGTGGATGTTA
CCACCTCTATTGGGATAAAGAATGGTGGTCTCTGGAGCAGACATTTCACGGTCTCTGACAAGCC
TTGCTGGTCTCACTGAAAGTTCTGCAGGGTATGAATAAAAATACCATGTTATCAGTCACCGATA
GAAGGTGCCGTGTAAGTAGAAGCAGATGACAGTAGAGCATAAATGAGTAGTTGCTGAAAATGAC
ATTTTGGGAAGTACTTTGAAAGAACAATTAGATTTTGTTTAGTCAAACAGACAGGTAATTAAGA
TGAGGTATTTAAGAAACCAAGCTAAATTTTGGATAAAAAACAAAGTGTATATAGAAAACGGGGG
TTTTAATACTTCAATGGCAAGATTAAAGGCTCATGCTTAATTGCAAACATGTTTGCTAGAAATG
ATATACTGAAACATATGATATCTATTTGCGCTCTGCACACCTTAACATATCAACATAGAAACAA
GCTCAACTGAGTTGTGCAAAAACAACTGATTTGAAGTAGCCAGTAATTGGACTATTGGTCATCC
ATTGAAAGGATTAAACAAATAGATGGTAAATATGGACAACTACTGTTATGTGGCAGAATAAGTG
AACAACATGAATTCAAACATCAAAGCTCACCCTGTAATTGATCGGTTGGATCAGTTACATCAAT
CCAATCATAAGATTCAGCATGCAGTGTGCCATAGAGAAGCTTGCTCAGAACTGTCATTCCTGGG
TGATTGTGAAGTGGAATAACTGATGACGGCGGCATACAAAATATACCCATCTACATATATTGAA
AAAATTAGTGTTCATCAGATGCTGAAACACAGGAGTGTTCTATCTACTAATTTTAAAGCCTCAA
AGTACTTACAGAACAGTTCAAATAAAAAACATCACGATCTTAAAAAAATGATGATGATATCTTA
CAGAGAAACTTTCACTTTCATGAATGTGTAAATATTTGATTGGAGATGTGAACTGGTTAGCCCC
ATTACGTCCTCTTCTTCCATTTGGTTGACGCGTTGAATTATTCCAATTACGAGCAATCTGTGCT
TCATTGTCTAGGCCAACATCTATAGGTCTTATCTCATCTGGGAAAATTAAACAAACTTAAAAAT
TTAAGTCTGCTGAAGCATTGGATTACACTGAATCAGATCAACAGTAAGTTTTATTTTTATCCTA
CATTTGCATTGAACTATCTCAGAGAAATCTTACATTGCAAGCTCTAATAGAATATGCAGATTAA
TGAGATATCTAAGCAAACAGTAACATCTTGCTCTTGAATCATGATATTAACAATCTGGCAGAGA
TAAAATGCATGGAACTAGCAGTAAGGTATACTGTCAGGCATCAGCATTAAATAAATCAAATTAA
TCAACTCATACTACAGGCAGAGATAAATCGTCCTAGTTACATGGTTGGACATACTTCTTAATTG
GTAATAATAACCATTAAGACTATGAGAAAATCTACATCTCAAAAGTTACTGGTTTATATCTTGG
CAATGCTTGAACATTTGCTATTGTTTAAAAGAACTAGTAACTAGGAAAAGCAAGTCGGAGACTT
GTTTCAAACAATAGAATCTACCGTGCAAAATAGCAGCCCAAAATGGTAAAAGTAAAATAGAGAT
ATGACAGAGGATGATCTACAGTTAACTATGAAATCACCAACATCCAACAATTTAAATTACTCAT
CCAGCCATCATAATTGTGATGGAAAAAATGTTGCTCATAACAAGAAATAAGAAAACTAGTTGCA
GATGGCTTGTTCACCAATACAAAATTGTACAAGACATGAAGTAAATCAAGAATCATGCATGCAC
AGCAGCAAAGAATCAATAATGCAAGCACAAAGGGCACCACTGCTGTGAGCACCTATGACTAGCG
AAGGATTCAACAAGAGCTTTTAGTCCCAAGCATGTTGAGGTAAACAAGAGATGAAACCCAATTT
GAGCCACATGAACCAAAAATTATATACAAGATTCTACTAATAAAAATAAAAAGTAGGAATACTA
CTTGCAAGGAACACAAGAATCTATAAATAAGCTGAAGAATTCAATATAACTCGGTTTACAGAAT
AACCAAGAAGGACCGCCACAATAGTCATAGTGGGTCAAGGACATTGCTGTGTATTCTTCTGAAG
TTGAACTTCAGAGTACTTGGCTACATGCCAAAAGTGCTTACAAGCCTAGCTCTACAGTGATACC
AACATTTCAACAGAATTCTTTACGACAATATTATTGTGTGCTCAACCTTTTTGATTTTGGCTGA
ATATCAGGCCCAGCTAAACCACTCTGCAACTAAAAAAATGCTTAAAAGATCAAGCGAACTGCAC
ACAAGAGGACAAGATTTGCCATCACCGATAAATCCGGAACCTATAGAGTTATTTCAAAACTTGC
TAATCACCATTTAAGCAAGTTTAAATTCATGCCATTTTAGCAGCAAAAAACATGCCATTGCAGC
ACGAAATGACAAATCTTTAAATTCATAGCAAGATGGTCGTCTTCCATAACAAACATTCAAGCAA
CAGAGATCTTTCTTCCAAAACAAACATTTTAGCAAGAGTGCATAAACTATTCCAATATTGAGTT
CAGGATGAAAAATATGCTTGGAAAGGTGAGATTACTACCAAAGATTATAAATTATATAAGTTTG
ACTGACCTAACAATGCACGAACTCTCTCAAGTGCTTCATCGGATATGGGCCCATCCGGAGAAAA
TGATACTTTACAAGCATTAGACAGGCTCTTTATTTTTGGCATCTTGCACTTCGATGTGCTATTG
AGAATATCGGAATTGTCAAACCTTCAAAAGACTGAGTGAATTTGGAACGTGATAATTGCTCAAC
GGATCCCCACAGTTGTGGCGATAAAGCACAGGCTGTCAATTTTAGCAC
Conservation Information
Conserved circRNAs osa_circ_022993*
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021