Detail information of Os04g0151900_circ_g.3


General Information
CircRNA Name Os04g0151900_circ_g.3
ID in PlantcircBase osa_circ_022993
Alias NA
Organism Oryza sativa
Position chr4: 3575998-3578989  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os04g0151900
Parent gene annotation Similar to H0820C10.4 protein. (Os04t0151900-01)
Parent gene strand -
Alternative splicing Os04g0151900_circ_g.2 Os04g0151900_circ_g.4
Support reads 1
Tissues root
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered Os04t0151900-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGTCAAACCTTCAAAAGACTGAGTGAATTTGGAACGTGATAATTGCTCAACGGATCCCCACAG
TTGTGGCGATAAAGCACAGGCTGTCAATTTTAGCACcaggtggtgtttcccttactgaagactt
ccggaagtatgaacagtccctccccttctcagcagaataaggaggagaaaggacatcaaagaga
gcacaagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGGTGGTGTTTCCCTTACTGAAGACTTCCGGAAGTATGAACAGTCCCTCCCCTTCTCAGCAGA
ATAAGGAGGAGAAAGGACATCAAAGAGAGCACAAGGTGTGATCGCTCTGAAAGTGTGGATGTTA
CCACCTCTATTGGGATAAAGAATGGTGGTCTCTGGAGCAGACATTTCACGGTCTCTGACAAGCC
TTGCTGGTCTCACTGAAAGTTCTGCAGGGTATGAATAAAAATACCATGTTATCAGTCACCGATA
GAAGGTGCCGTGTAAGTAGAAGCAGATGACAGTAGAGCATAAATGAGTAGTTGCTGAAAATGAC
ATTTTGGGAAGTACTTTGAAAGAACAATTAGATTTTGTTTAGTCAAACAGACAGGTAATTAAGA
TGAGGTATTTAAGAAACCAAGCTAAATTTTGGATAAAAAACAAAGTGTATATAGAAAACGGGGG
TTTTAATACTTCAATGGCAAGATTAAAGGCTCATGCTTAATTGCAAACATGTTTGCTAGATATG
ATATACTGAAACATATGATATCTATTTGCGCTCTGCACACCTTTACATATCAACATAGAAACAA
GCTCAACTGAGTTGTGCAAAAACAACTGATTTGAAGTAGCCAGTAATTGGACTATTGGTCATCC
ATTGAAAGGATTAAACAAATAGATGGTAAATATGGACAACTACTGTTATGTGGCAGAATAAGTG
AACAACATGAATTCAAACATCAAAGCTCACCCTGTAATTGATCGGTTGGATCAGTTACATCAAT
CCAATCATAAGATTCAGCATGCAGTGTGCCATAGAGAAGCTTGCTCAGAACTGTCATTCCTGGG
TGATTGTGAAGTGGAATAACTGATGACGGCGGCATACAAAATATACCCATCTACATATATTGAA
AAATTTAGTGTTCATCAGATGCTGAAACACAGGAGTGTTCTATCTACTAATTTTAAAGCCTCAA
AGTACTTACAGAACAGTTCAAATAAAAAACATCACGATCTTAAAAAAATGATGATGATATCTTA
CAGAGAAACTTTCACTTTCATGAATGTGTAAATATTTGATTGGAGATGTGAACTGGTTAGCCCC
ATTACGTCCTCTTCTTCCATTTGGTTGACGCGTTGAATTATTCCAATTACGAGCAATCTGTGCT
TCATTGTCTAGGCCAACATCTATAGGTCTTATCTCATCTGGGAAAATTAAACAAACTTAAAAAT
TTAAGTCTGCTGAAGCATTGGATTACACTGAATCAGATCAACAGTAAGTTTTATTTTTATCCTA
CATTTGCATTGAACTATCTCAGAGAAATCTTACATTGCAAGCTCTAATAGAATATGCAGATTAA
TGAGATATCTAAGCAAACAGTAACATCTTGCTCTTGAATCATGATATTAACAATCTGGCAGAGA
TAAAATGCATGGAACTAGCAGTAAGGTATACTGTCAGGCATCAGCATTAAATAAATCAAATTAA
TCAACTCATACTACAGGCAGAGATAAATCGTCCTAGTTACATGGTTGGACATACTTCTTAATTG
GTAATAATAACCATTAAGACTATGAGAAAATCTACATCTCAAAAGTTACTGGTTTATATCTTGG
CAATGCTTGAACATTTGCTATTGTTTAAAAGAACTAGTAACTAGGAAAAGCAAGTCGGAGACTT
GTTTCAAACAATAGAATCTACCGTGCAAAATAGCAGCCCAAAATGGTAAAAGTAAAATAGAGAT
ATGACAGAGGATGATCTACAGTTAACTATGAAATCACCAACATCCAACAATTTAAATTACTCAT
CCAGCCATCATAATTGTGATGGAAAAAATGTTGCTCATAACAAGAAATAAGAAAACTAGTTGCA
GATGGCTTGTTCACCAATACAAAATTGTACAAGACATGAAGTAAATCAAGAATCATGCATGCAC
AGCAGCAAAGAATCAATAATGCAAGCACAAAGGGCACCACTGCTGTGAGCACCTATGACTAGCG
AAGGATTCAACAAGAGCTTTTAGTCCCAAGCATGTTGAGGTAAACAAGAGATGAAACCCAATTT
GAGCCACATGAACCAAAAATTATATACAAGATTCTACTAATAAAAATAAAAAGTAGGAATACTA
CTTGCAAGGAACACAAGAATCTATAAATAAGCTGAAGAATTCAATATAACTCGGTTTACAGAAT
AACCAAGAAGGACCGCCACAATAGTCATAGTGGGTCAAGGACATTGCTGTGTATTCTTCTGAAG
TTGAACTTCAGAGTACTTGGCTACATGCCAAAAGTGCTTACAAGCCTAGCTCTACAGTGATACC
AACATTTCAACAGAATTCTTTACGACAATATTATTGTGTGCTCAACCTTTTTGATTTTGGCTGA
ATATCAGGCCCAGCTAAACCACTCTGCAACTAAAAAAATGCTTAAAAGATCAAGCGAACTGCAC
ACAAGAGGACAAGATTTGCCATCACCGATAAATCCGGAACCTATAGAGTTATTTCAAAACTTGC
TAATCACCATTTAAGCAAGTTTAAATTCATGCCATTTTAGCAGCAAAAAACATGCCATTGCAGC
ACGAAATGACAAATCTTTAAATTCATAGCAAGATGGTCGTCTTCCATAACAAACATTCAAGCAA
CAGAGATCTTTCTTCCAAAACAAACATTTTAGCAAGAGTGCATAAACTATTCCAATATTGAGTT
CAGGATGAAAAATATGCTTGGAAAGGTGAGATTACTACCAAAGATTATAAATTATATAAGTTTG
ACTGACCTAACAATGCACGAACTCTCTCAAGTGCTTCATCGGATATGGGCCCATCCGGAGAAAA
TGATACTTTACAAGCATTAGACAGGCTCTTTATTTTTGGCATCTTGCACTTCGATGTGCTATTG
AGAATATCGGAATTGTCAAACCTTCAAAAGACTGAGTGAATTTGGAACGTGATAATTGCTCAAC
GGATCCCCACAGTTGTGGCGATAAAGCACAGGCTGTCAATTTTAGCAC
Conservation Information
Conserved circRNAs osi_circ_005307*
PMCS 0.106758344
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017