Detail information of BGIOSGA015645_circ_igg.1


General Information
CircRNA Name BGIOSGA015645_circ_igg.1
ID in PlantcircBase osi_circ_014678
Alias Chr04:3010606_3015514(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 2733994-2738904  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA015645_circ_igg.2 BGIOSGA015645_circ_igg.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTCCAAGAACTGCAAATCAAGCAATCGTTTTTGGGATGTGCACTCATTTCCACTTTTAAGTCAT
GCTGTGAAAAGCCGCCCTTCGTCCAAGCGCGACACCccaggtggtgtttcccttactgaagact
tccggaagtatgaacagtccctccccttctcagcagaataaggaggagaaaggacatcaaagag
agcacaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCAGGTGGTGTTTCCCTTACTGAAGACTTCCGGAAGTATGAACAGTCCCTCCCCTTCTCAGCAG
AATAAGGAGGAGAAAGGACATCAAAGAGAGCACAAGGTGTGATCGCTCTGAAAGTGTGGATGTT
ACCACCTCTATTGGGATAAAGAATGGTGGTCTCTGGAGCAGACATTTCACGGTCTCTGACAAGC
CTTGCTGGTCTCACTGAAAGTTCTGCAGGGTATGAATAAAAATACCATGTTATCAGTCACCGAT
AGAAGGTGCCGTGTAAGTAGAAGCAGATGACAGTAGAGCATAAATGAGTAGTTGCTGAAAATGA
CATTTTGGGAAGTACTTTGAAAGAACAATTAGATTTTGTTTAGTCAAACAGACAGGTAATTAAG
ATGAGGTATTTAAGAAACCAAGCTAAATTTTGGATAAAAAACAAAGTGTATATAGAAAACGGGG
GTTTTAATACTTCAATGGCAAGATTAAAGGCTCATGCTTAATTGCAAACATGTTTGCTAGAAAT
GATATACTGAAACATATGATATCTATTTGCGCTCTGCACACCTTAACATATCAACATAGAAACA
AGCTCAACTGAGTTGTGCAAAAACAACTGATTTGAAGTAGCCAGTAATTGGACTATTGGTCATC
CATTGAAAGGATTAAACAAATAGATGGTAAATATGGACAACTACTGTTATGTGGCAGAATAAGT
GAACAACATGAATTCAAACATCAAAGCTCACCCTGTAATTGATCGGTTGGATCAGTTACATCAA
TCCAATCATAAGATTCAGCATGCAGTGTGCCATAGAGAAGCTTGCTCAGAACTGTCATTCCTGG
GTGATTGTGAAGTGGAATAACTGATGACGGCGGCATACAAAATATACCCATCTACATATATTGA
AAAAATTAGTGTTCATCAGATGCTGAAACACAGGAGTGTTCTATCTACTAATTTTAAAGCCTCA
AAGTACTTACAGAACAGTTCAAATAAAAAACATCACGATCTTAAAAAAATGATGATGATATCTT
ACAGAGAAACTTTCACTTTCATGAATGTGTAAATATTTGATTGGAGATGTGAACTGGTTAGCCC
CATTACGTCCTCTTCTTCCATTTGGTTGACGCGTTGAATTATTCCAATTACGAGCAATCTGTGC
TTCATTGTCTAGGCCAACATCTATAGGTCTTATCTCATCTGGGAAAATTAAACAAACTTAAAAA
TTTAAGTCTGCTGAAGCATTGGATTACACTGAATCAGATCAACAGTAAGTTTTATTTTTATCCT
ACATTTGCATTGAACTATCTCAGAGAAATCTTACATTGCAAGCTCTAATAGAATATGCAGATTA
ATGAGATATCTAAGCAAACAGTAACATCTTGCTCTTGAATCATGATATTAACAATCTGGCAGAG
ATAAAATGCATGGAACTAGCAGTAAGGTATACTGTCAGGCATCAGCATTAAATAAATCAAATTA
ATCAACTCATACTACAGGCAGAGATAAATCGTCCTAGTTACATGGTTGGACATACTTCTTAATT
GGTAATAATAACCATTAAGACTATGAGAAAATCTACATCTCAAAAGTTACTGGTTTATATCTTG
GCAATGCTTGAACATTTGCTATTGTTTAAAAGAACTAGTAACTAGGAAAAGCAAGTCGGAGACT
TGTTTCAAACAATAGAATCTACCGTGCAAAATAGCAGCCCAAAATGGTAAAAGTAAAATAGAGA
TATGACAGAGGATGATCTACAGTTAACTATGAAATCACCAACATCCAACAATTTAAATTACTCA
TCCAGCCATCATAATTGTGATGGAAAAAATGTTGCTCATAACAAGAAATAAGAAAACTAGTTGC
AGATGGCTTGTTCACCAATACAAAATTGTACAAGACATGAAGTAAATCAAGAATCATGCATGCA
CAGCAGCAAAGAATCAATAATGCAAGCACAAAGGGCACCACTGCTGTGAGCACCTATGACTAGC
GAAGGATTCAACAAGAGCTTTTAGTCCCAAGCATGTTGAGGTAAACAAGAGATGAAACCCAATT
TGAGCCACATGAACCAAAAATTATATACAAGATTCTACTAATAAAAATAAAAAGTAGGAATACT
ACTTGCAAGGAACACAAGAATCTATAAATAAGCTGAAGAATTCAATATAACTCGGTTTACAGAA
TAACCAAGAAGGACCGCCACAATAGTCATAGTGGGTCAAGGACATTGCTGTGTATTCTTCTGAA
GTTGAACTTCAGAGTACTTGGCTACATGCCAAAAGTGCTTACAAGCCTAGCTCTACAGTGATAC
CAACATTTCAACAGAATTCTTTACGACAATATTATTGTGTGCTCAACCTTTTTGATTTTGGCTG
AATATCAGGCCCAGCTAAACCACTCTGCAACTAAAAAAATGCTTAAAAGATCAAGCGAACTGCA
CACAAGAGGACAAGATTTGCCATCACCGATAAATCCGGAACCTATAGAGTTATTTCAAAACTTG
CTAATCACCATTTAAGCAAGTTTAAATTCATGCCATTTTAGCAGCAAAAAACATGCCATTGCAG
CACGAAATGACAAATCTTTAAATTCATAGCAAGATGGTCGTCTTCCATAACAAACATTCAAGCA
ACAGAGATCTTTCTTCCAAAACAAACATTTTAGCAAGAGTGCATAAACTATTCCAATATTGAGT
TCAGGATGAAAAATATGCTTGGAAAGGTGAGATTACTACCAAAGATTATAAATTATATAAGTTT
GACTGACCTAACAATGCACGAACTCTCTCAAGTGCTTCATCGGATATGGGCCCATCCGGAGAAA
ATGATACTTTACAAGCATTAGACAGGCTCTTTATTTTTGGCATCTTGCACTTCGATGTGCTATT
GAGAATATCGGAATTGTCAAACCTTCAAAAGACTGAGTGAATTTGGAACGTGATAATTGCTCAA
CGGATCCCCACAGTTGTGGCGATAAAGCACAGGCTGTCAATTTTAGCACCTACACAGGCAACAA
AGTATCTTATGACATTAGACATGAATAGACCCCTAAAAACAAAAAGAATTGTGTGAAAAGTATA
GGAGAACTTGGGGTAACAAAACATATTTTACAAGATTTAGATCGCTTAATCGATACGCGGTGAA
GAAAAATCATCATATCTAGAAAAATGTAGTATAGCAAATGCTGAACTCGTATTAAATTCGGATG
ACGATAATGAGTATACCACATTGATGTGTAATCAGTTAGACATCAAGATCCAACGGAATGACTA
AATTTCGAGCCATCTCAAAAAAGGTCCGCATTCACAGTTTAAAGGGATGTCTGCATAGGGTAAA
GCCAGTAAGGTCCTCTTAAACCTATGAACTAGCAGACTACCCAATCACGCCCTAAAATTCATGG
CCGCGCAGATTCACGGAAAACCGCGCTCGCTGCGACTGCATACCGACTAAACACAAACAGGCAA
ATCCATCCCCATCCCCGACGAGAACTCCCGTTCAGGGGTCGCCGCGACGCGATCGGCATTTCAT
CAAACACCCCACTGGCATCGGAGCAATGAGACAGCTAAAACTGGACCCAGACCCACCCACACAC
CCAGCGCCTCACATACGCACCACGAAATGAGACCGAGGACAGACAAACGATGAGGCCGCGGTCG
CCCAGGGCAGGTGAATTGGGCGCACCCCCCTCATAAGTTCAGTAGCGTCGCGTGCACCGAGCAC
AAGGAGAGAATGGGAGCCTCCTCCCGAGGGGCCCGCGTGTGATGAGAAGAGCGTTGTGTTGACC
CGTACCATGGCACTTGGCTGCGCCAGCACAGTGGGGCTCACATGCAGCAGCACCTAGTACACTA
TCATGCGATTGAAACAAATAAAATAAAATTTGAGCGGCAGAAAAGGCTTACTAATGACTCGATT
TGGAGAACCCCTAATTTGCCTCGCCTCCTCTTCTTCCTCCTCATTCCAGTCCTCACCCTACCTA
GGCTTCTACTAATACTACCCTTCTAGGCTCCAAGGGCACTCCTCTTCACTCTCCGTCAGCCTCG
TCCGCATGGCGAGCAGCCGCTGATGGTCCACGGCGTCGTGGTGTGGGGATAGGACGCACACAAG
AGGACAAGATTATCAACACAACAATTTAGTTGTGATGTAAATATGATTATGCCAACAATTTAAT
ATGTTAAAAGCTGGCAACCCCAGCTTTTGTTTTTTTCTTTCTTTTGTATCAAACTCGTATGCTT
TCAGTAAAAGCTAGCCGAAAGCCATTTATCTTAAAAAAATGTAAATATGAATAATTATATACAG
AAAACTATTGGCAGAACCACCTAAGAGAATATTGAAAGGTAACTCATAAAATTTAACATGACAG
TAGAAGGTCAAGGGTGAAGTAGAATAGTTTAGATTGACTCCACGAGCATCTGTATAAGTGAATC
CTTGAATTTAATTGCACAAATATATATGTTGAAGTATATGCAAATATGTTGAAGTTTGGATGGC
GTAGCACCTATAAAATTTCGTGCTAGAAGCCTAGAATATATGTGATTTTGGAAACAGTATTTCA
ATTCATCTTTTCATTGGCAGGAGTTGGGATTTGTCCCATCACCTCTTTCATTTTATTTCTCCTT
TTTACTTCTAAGACCTTTTGGTGGTGTACCCATTGGCAAAGGCCGGAGATGTAATCCATTTCCA
TTATCTAAAAAAAATGTTGAAGTATATGCTGTTTTTCACATCACAGGTTGTAACTTATAACAAA
GGCATAAGTGGAAGCAGCAATACCTCTCAAACAAGAGGCAGATGTAGTGAAATTGGACAAAATA
GTAGTGCACAGCTCCAAGAACTGCAAATCAAGCAATCGTTTTTGGGATGTGCACTCATTTCCAC
TTTTAAGTCATGCTGTGAAAAGCCGCCCTTCGTCCAAGCGCGACACC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021