Detail information of BGIOSGA031628_circ_g.3


General Information
CircRNA Name BGIOSGA031628_circ_g.3
ID in PlantcircBase osi_circ_002874
Alias 10:17689895|17691073
Organism Oryza sativa ssp. indica
Position chr10: 17689895-17691073  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA031628
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA031628_circ_g.1 BGIOSGA031628_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA031628-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCCCAACACTGATGATATGCTATTATCAGCCTGTATTGACCTATTTACGCTTTCATTCAAATG
TGCTTCAGCAATGCTAACAGCATACGGTTCAATTTTcatgttcaacagcgtgtttttcacttga
atccgttgaatgtctcaatccaaacattgttcttctgttgatgtatgaagtctctggattcctt
ccaacagt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATGTTCAACAGCGTGTTTTTCACTTGAATCCGTTGAATGTCTCAATCCAAACATTGTTCTTCT
GTTGATGTATGAAGTCTCTGGATTCCTTCCAACAGTCAAATTTGGTTTTACAAAAGAAGATGCA
TTATACCAGTCACCACCTTCATTAGACTTGACACTTTCAGTAATGGCTGACCCAGACAAGTTAA
TGTCTCCAGCACCTGAAGTTTCTTTAATATATTTACATTTTGAACTAATGGGCTCTGAATGAAA
TATGTCCTGTTGCATACTTTCAGTTTCAGGAGCCTTTCTTCTGAAGTCACGATCCATATTAACT
GTCAAAGCAGTCTCTGGGGTTTCTTTATGTGTAATAATATCACCGGCTTTTCTTCTACGGCCAT
TTTGTACACCCATATTTGAGCTCCTTGAATCAATCACACACACCAATTTATCATCTTCTCCACA
ATCCACAGCCAGACCACCTCGTTCTATGTCTTGAGGCTCGACAATTGTTAAATCAGTAGTGAGA
ACTTTACTGAGATTGGGACCAGAATCCACTTTAGGGATATGCCTAGGGACAACAACAGGGATGA
ACGACGATCCTTCACTACTATATGCAGATATTTTGGACCTGGATCTATTTGTGGGAGCAACCGA
TGGTACTGAGTTACGATGGAATGCTCTAGCACCTATAGAGAGATCCACTTTGGAGCGAATTCTT
GGAGTTGTTATAGGCACAGCATAATCTGTCTGCCTCTTCTGGTCATCAGAGAACTTTGGGTTCA
ATCTAACCCTAGGAGAAACAACTGGTAGAGAATCAGATCTTGTGAGCCGAATATTGCTTGTTAT
AGGTTCTTTTGGTAGTTTCTTTGTCACTGCAGAAGAAGCTGGAACAGGAACTTCTTTTGAAGCA
GACATTGAGAGTTTAAGCAAAGTATCGGAAGATGCTTCCTTGGCTGCGGTTTCGAGAAATAGCA
AAATATACATAGTTTTAGGGTGAAGAATCATAACTCAAGGATAATGGATGAAGAAAAATTATAT
TGATGTTATACGCCAAATGATAATTGTTTACCTGGGCTTCTGGAAACTGATAACCTTCCCAACA
CTGATGATATGCTATTATCAGCCTGTATTGACCTATTTACGCTTTCATTCAAATGTGCTTCAGC
AATGCTAACAGCATACGGTTCAATTTT
Conservation Information
Conserved circRNAs osa_circ_007288*
PMCS
Functional Information
Coding potential Y
Potential coding position 17690797-17691068(-)
17689899-17691068(-)
17691036-17689960(+)
17690992-17689919(+)
Potential amino acid sequence MSASKEVPVPASSAVTKKLPKEPITSNIRLTRSDSLPVVSPRVRLNPKFSDDQKRQTDYAVPIT
TPRIRSKVDLSIGARAFHRNSVPSVAPTNRSRSKISAYSSEGSSFIPVVVPRHIPKVDSGPNLS
KVLTTDLTIVEPQDIERGGLAVDCGEDDKLVCVIDSRSSNMGVQNGRRRKAGDIITHKETPETA
LTVNMDRDFRRKAPETESMQQDIFHSEPISSKCKYIKETSGAGDINLSGSAITESVKSNEGGDW
YNASSFVKPNLTVGRNPETSYINRRTMFGLRHSTDSSEKHAVEHEN*(-)
MKIEPYAVSIAEAHLNESVNRSIQADNSISSVLGRLSVSRSPAKEASSDTLLKLSMSASKEVPV
PASSAVTKKLPKEPITSNIRLTRSDSLPVVSPRVRLNPKFSDDQKRQTDYAVPITTPRIRSKVD
LSIGARAFHRNSVPSVAPTNRSRSKISAYSSEGSSFIPVVVPRHIPKVDSGPNLSKVLTTDLTI
VEPQDIERGGLAVDCGEDDKLVCVIDSRSSNMGVQNGRRRKAGDIITHKETPETALTVNMDRDF
RRKAPETESMQQDIFHSEPISSKCKYIKETSGAGDINLSGSAITESVKSNEGGDWYNASSFVKP
NLTVGRNPETSYINRRTMFGLRHSTDSSEKHAVEHEN*(-)
MCFSNANSIRFNFHVQQRVFHLNPLNVSIQTLFFC*(+)
MLLSACIDLFTLSFKCASAMLTAYGSIFMFNSVFFT*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021