Detailed infomation of each circRNA
General Information | |
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CircRNA Name | BGIOSGA031628_circ_g.2 |
ID in PlantcircBase | osi_circ_002873 |
Alias | 10:17689895|17690833 |
Organism | Oryza sativa ssp. indica |
Position | chr10: 17689895-17690833 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA031628 |
Parent gene annotation | NA |
Parent gene strand | - |
Alternative splicing | BGIOSGA031628_circ_g.1 BGIOSGA031628_circ_g.3 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | BGIOSGA031628-TA:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS |
Functional Information | |
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Coding potential | Y |
Potential coding position |
17689899-17690752(-) 17690797-17689897(-) 17690823-17689960(+) |
Potential amino acid sequence |
MPRKHLPILCLNSQCLLQKKFLFQLLLQ*(-) MSASKEVPVPASSAVTKKLPKEPITSNIRLTRSDSLPVVSPRVRLNPKFSDDQKRQTDYAVPIT TPRIRSKVDLSIGARAFHRNSVPSVAPTNRSRSKISAYSSEGSSFIPVVVPRHIPKVDSGPNLS KVLTTDLTIVEPQDIERGGLAVDCGEDDKLVCVIDSRSSNMGVQNGRRRKAGDIITHKETPETA LTVNMDRDFRRKAPETESMQQDIFHSEPISSKCKYIKETSGAGDINLSGSAITESVKSNEGGDW YNASSFVKPNLTVGRNPETSYINRRTMFGLRHSTDSSEKHAVEHAKEASSDTLLKLSMSASKEV PVPASSAVTKKLPKEPITSNIRLTRSDSLPVVSPRVRLNPKFSDDQKRQTDYAVPITTPRIRSK VDLSIGARAFHRNSVPSVAPTNRSRSKISAYSSEGSSFIPVVVPRHIPKVDSGPNLSKVLTTDL TIVEPQDIERGGLAVDCGEDDKLVCVIDSRSSNMGVQNGRRRKAGDIITHKETPETALTVNMDR DFRRKAPETESMQQDIFHSEPISSKCKYIKETSGAGDINLSGSAITESVKSNEGGDWYNASSFV KPNLTVGRNPETSYINRRTMFGLRHSTDSSEKHAVEHAKEASSDTLLKLSMSASKEVPVPASSA VTKKLPKEPITSNIRLTRSDSLPVVSPRVRLNPKFSDDQKRQTDYAVPITTPRIRSKVDLSIGA RAFHRNSVPSVAPTNRSRSKISAYSSEGSSFIPVVVPRHIPKVDSGPNLSKVLTTDLTIVEPQD IERGGLAVDCGEDDKLVCVIDSRSSNMGVQNGRRRKAGDIITHKETPETALTVNMDRDFRRKAP ETESMQQDIFHSEPISSKCKYIKETSGAGDINLSGSAITESVKSNEGGDWYNASSFVKPNLTVG RNPETSYINRRTMFGLRHSTDSSEKHAVEHAKEASSDTLLKLSMSASKEVPVPASSAVTKKLPK EPITSNIRLTRSDSLPVVSPRVRLNPKFSDDQKRQTDYAVPITTPRIRSKVDLSIGARAFHRNS VPSVAPTNRSRSKISAYSSEGSSFIPVVVPRHIPKVDSGPNLSKVLTTDLTIVEPQDIERGGLA VDCGEDDKLVCVIDSRSSNMGVQNGRRRKAGDIITHKETPETALTVNMDRDFRRKAPETESMQQ DIFHSEPISSKCKYIKETSGAGDINLSGSAITESVKSNEGGDWYNASSFVKPNLTVGRNPETSY INRRTMFGLRHSTDSSEKHAVEH(-) MLPWHVQQRVFHLNPLNVSIQTLFFC*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Huang et al., 2021 |