Detail information of BGIOSGA031628_circ_g.2


General Information
CircRNA Name BGIOSGA031628_circ_g.2
ID in PlantcircBase osi_circ_002873
Alias 10:17689895|17690833
Organism Oryza sativa ssp. indica
Position chr10: 17689895-17690833  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA031628
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA031628_circ_g.1 BGIOSGA031628_circ_g.3
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA031628-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTGGTAGTTTCTTTGTCACTGCAGAAGAAGCTGGAACAGGAACTTCTTTTGAAGCAGACATTG
AGAGTTTAAGCAAAGTATCGGAAGATGCTTCCTTGGcatgttcaacagcgtgtttttcacttga
atccgttgaatgtctcaatccaaacattgttcttctgttgatgtatgaagtctctggattcctt
ccaacagt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATGTTCAACAGCGTGTTTTTCACTTGAATCCGTTGAATGTCTCAATCCAAACATTGTTCTTCT
GTTGATGTATGAAGTCTCTGGATTCCTTCCAACAGTCAAATTTGGTTTTACAAAAGAAGATGCA
TTATACCAGTCACCACCTTCATTAGACTTGACACTTTCAGTAATGGCTGACCCAGACAAGTTAA
TGTCTCCAGCACCTGAAGTTTCTTTAATATATTTACATTTTGAACTAATGGGCTCTGAATGAAA
TATGTCCTGTTGCATACTTTCAGTTTCAGGAGCCTTTCTTCTGAAGTCACGATCCATATTAACT
GTCAAAGCAGTCTCTGGGGTTTCTTTATGTGTAATAATATCACCGGCTTTTCTTCTACGGCCAT
TTTGTACACCCATATTTGAGCTCCTTGAATCAATCACACACACCAATTTATCATCTTCTCCACA
ATCCACAGCCAGACCACCTCGTTCTATGTCTTGAGGCTCGACAATTGTTAAATCAGTAGTGAGA
ACTTTACTGAGATTGGGACCAGAATCCACTTTAGGGATATGCCTAGGGACAACAACAGGGATGA
ACGACGATCCTTCACTACTATATGCAGATATTTTGGACCTGGATCTATTTGTGGGAGCAACCGA
TGGTACTGAGTTACGATGGAATGCTCTAGCACCTATAGAGAGATCCACTTTGGAGCGAATTCTT
GGAGTTGTTATAGGCACAGCATAATCTGTCTGCCTCTTCTGGTCATCAGAGAACTTTGGGTTCA
ATCTAACCCTAGGAGAAACAACTGGTAGAGAATCAGATCTTGTGAGCCGAATATTGCTTGTTAT
AGGTTCTTTTGGTAGTTTCTTTGTCACTGCAGAAGAAGCTGGAACAGGAACTTCTTTTGAAGCA
GACATTGAGAGTTTAAGCAAAGTATCGGAAGATGCTTCCTTGG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 17689899-17690752(-)
17690797-17689897(-)
17690823-17689960(+)
Potential amino acid sequence MPRKHLPILCLNSQCLLQKKFLFQLLLQ*(-)
MSASKEVPVPASSAVTKKLPKEPITSNIRLTRSDSLPVVSPRVRLNPKFSDDQKRQTDYAVPIT
TPRIRSKVDLSIGARAFHRNSVPSVAPTNRSRSKISAYSSEGSSFIPVVVPRHIPKVDSGPNLS
KVLTTDLTIVEPQDIERGGLAVDCGEDDKLVCVIDSRSSNMGVQNGRRRKAGDIITHKETPETA
LTVNMDRDFRRKAPETESMQQDIFHSEPISSKCKYIKETSGAGDINLSGSAITESVKSNEGGDW
YNASSFVKPNLTVGRNPETSYINRRTMFGLRHSTDSSEKHAVEHAKEASSDTLLKLSMSASKEV
PVPASSAVTKKLPKEPITSNIRLTRSDSLPVVSPRVRLNPKFSDDQKRQTDYAVPITTPRIRSK
VDLSIGARAFHRNSVPSVAPTNRSRSKISAYSSEGSSFIPVVVPRHIPKVDSGPNLSKVLTTDL
TIVEPQDIERGGLAVDCGEDDKLVCVIDSRSSNMGVQNGRRRKAGDIITHKETPETALTVNMDR
DFRRKAPETESMQQDIFHSEPISSKCKYIKETSGAGDINLSGSAITESVKSNEGGDWYNASSFV
KPNLTVGRNPETSYINRRTMFGLRHSTDSSEKHAVEHAKEASSDTLLKLSMSASKEVPVPASSA
VTKKLPKEPITSNIRLTRSDSLPVVSPRVRLNPKFSDDQKRQTDYAVPITTPRIRSKVDLSIGA
RAFHRNSVPSVAPTNRSRSKISAYSSEGSSFIPVVVPRHIPKVDSGPNLSKVLTTDLTIVEPQD
IERGGLAVDCGEDDKLVCVIDSRSSNMGVQNGRRRKAGDIITHKETPETALTVNMDRDFRRKAP
ETESMQQDIFHSEPISSKCKYIKETSGAGDINLSGSAITESVKSNEGGDWYNASSFVKPNLTVG
RNPETSYINRRTMFGLRHSTDSSEKHAVEHAKEASSDTLLKLSMSASKEVPVPASSAVTKKLPK
EPITSNIRLTRSDSLPVVSPRVRLNPKFSDDQKRQTDYAVPITTPRIRSKVDLSIGARAFHRNS
VPSVAPTNRSRSKISAYSSEGSSFIPVVVPRHIPKVDSGPNLSKVLTTDLTIVEPQDIERGGLA
VDCGEDDKLVCVIDSRSSNMGVQNGRRRKAGDIITHKETPETALTVNMDRDFRRKAPETESMQQ
DIFHSEPISSKCKYIKETSGAGDINLSGSAITESVKSNEGGDWYNASSFVKPNLTVGRNPETSY
INRRTMFGLRHSTDSSEKHAVEH(-)
MLPWHVQQRVFHLNPLNVSIQTLFFC*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021