Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os10g0494800_circ_g.2 |
ID in PlantcircBase | osa_circ_007288 |
Alias | Os_ciR2796 |
Organism | Oryza sativa |
Position | chr10: 18800249-18801427 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, find_circ |
Parent gene | Os10g0494800 |
Parent gene annotation |
Similar to Katanin p80 WD40-containing subunit B1 (Katanin p80 s ubunit B1) (p80 katanin). (Os10t0494800-01) |
Parent gene strand | - |
Alternative splicing | Os10g0494800_circ_g.1 |
Support reads | 4/2 |
Tissues | root/shoot, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os10t0494800-01:2 |
Conservation Information | |
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Conserved circRNAs | osi_circ_002874* osi_circ_008562 |
PMCS | 0.333359811 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
18801390-18800314(+) 18801346-18800273(+) 18801151-18801422(-) 18800253-18801422(-) |
Potential amino acid sequence |
MCFSNANSIRFNFHVQQRVFHLNPLNVSIQTLFFC*(+) MLLSACIDLFTLSFKCASAMLTAYGSIFMFNSVFFT*(+) MSASKEVPVPASSAVTKKLPKEPITSNIRLTRSDSLPVVSPRVRLNPKFSDDQKRQTDYAVPIT TPRIRSKVDLSIGARAFHRNSVPSVAPTNRSRSKISAYSSEGSSFIPVVVPRHIPKVDSGPNLS KVLTTDLTIVEPQDIERGGLAVDCGEDDKLVCVIDSRSSNMGVQNGRRRKAGDIITHKETPETA LTVNMDRDFRRKAPETESMQQDIFHSEPISSKCKYIKETSGAGDINLSGSAITESVKSNEGGDW YNASSFVKPNLTVGRNPETSYINRRTMFGLRHSTDSSEKHAVEHEN*(-) MKIEPYAVSIAEAHLNESVNRSIQADNSISSVLGRLSVSRSPAKEASSDTLLKLSMSASKEVPV PASSAVTKKLPKEPITSNIRLTRSDSLPVVSPRVRLNPKFSDDQKRQTDYAVPITTPRIRSKVD LSIGARAFHRNSVPSVAPTNRSRSKISAYSSEGSSFIPVVVPRHIPKVDSGPNLSKVLTTDLTI VEPQDIERGGLAVDCGEDDKLVCVIDSRSSNMGVQNGRRRKAGDIITHKETPETALTVNMDRDF RRKAPETESMQQDIFHSEPISSKCKYIKETSGAGDINLSGSAITESVKSNEGGDWYNASSFVKP NLTVGRNPETSYINRRTMFGLRHSTDSSEKHAVEHEN*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017 |