Detail information of Os10g0494800_circ_g.2


General Information
CircRNA Name Os10g0494800_circ_g.2
ID in PlantcircBase osa_circ_007288
Alias Os_ciR2796
Organism Oryza sativa
Position chr10: 18800249-18801427  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os10g0494800
Parent gene annotation Similar to Katanin p80 WD40-containing subunit B1 (Katanin p80 s
ubunit B1) (p80 katanin). (Os10t0494800-01)
Parent gene strand -
Alternative splicing Os10g0494800_circ_g.1
Support reads 4/2
Tissues root/shoot, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os10t0494800-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCCCAACACTGATGATATGCTATTATCAGCCTGTATTGACCTATTTACGCTTTCATTCAAATG
TGCTTCAGCAATGCTAACAGCATACGGTTCAATTTTcatgttcaacagcgtgtttttcacttga
atccgttgaatgtctcaatccaaacattgttcttctgttgatgtatgaagtctctggattcctt
ccaacagt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1063
Transcript exons: 18800249-18801187,18801304-18801427
CATGTTCAACAGCGTGTTTTTCACTTGAATCCGTTGAATGTCTCAATCCAAACATTGTTCTTCT
GTTGATGTATGAAGTCTCTGGATTCCTTCCAACAGTCAAATTTGGTTTTACAAAAGAAGATGCA
TTATACCAGTCACCACCTTCATTAGACTTGACACTTTCAGTAATGGCTGACCCAGACAAGTTAA
TGTCTCCAGCACCTGAAGTTTCTTTAATATATTTACATTTTGAACTAATGGGCTCTGAATGAAA
TATGTCCTGTTGCATACTTTCAGTTTCAGGAGCCTTTCTTCTGAAGTCACGATCCATATTAACT
GTCAAAGCAGTCTCTGGGGTTTCTTTATGTGTAATAATATCACCGGCTTTTCTTCTACGGCCAT
TTTGTACACCCATATTTGAGCTCCTTGAATCAATCACACACACCAATTTATCATCTTCTCCACA
ATCCACAGCCAGACCACCTCGTTCTATGTCTTGAGGCTCGACAATTGTTAAATCAGTAGTGAGA
ACTTTACTGAGATTGGGACCAGAATCCACTTTAGGGATATGCCTAGGGACAACAACAGGGATGA
ACGACGATCCTTCACTACTATATGCAGATATTTTGGACCTGGATCTATTTGTGGGAGCAACCGA
TGGTACTGAGTTACGATGGAATGCTCTAGCACCTATAGAGAGATCCACTTTGGAGCGAATTCTT
GGAGTTGTTATAGGCACAGCATAATCTGTCTGCCTCTTCTGGTCATCAGAGAACTTTGGGTTCA
ATCTAACCCTAGGAGAAACAACTGGTAGAGAATCAGATCTTGTGAGCCGAATATTGCTTGTTAT
AGGTTCTTTTGGTAGTTTCTTTGTCACTGCAGAAGAAGCTGGAACAGGAACTTCTTTTGAAGCA
GACATTGAGAGTTTAAGCAAAGTATCGGAAGATGCTTCCTTGGCTGGGCTTCTGGAAACTGATA
ACCTTCCCAACACTGATGATATGCTATTATCAGCCTGTATTGACCTATTTACGCTTTCATTCAA
ATGTGCTTCAGCAATGCTAACAGCATACGGTTCAATTTT

Genomic sequence CATGTTCAACAGCGTGTTTTTCACTTGAATCCGTTGAATGTCTCAATCCAAACATTGTTCTTCT
GTTGATGTATGAAGTCTCTGGATTCCTTCCAACAGTCAAATTTGGTTTTACAAAAGAAGATGCA
TTATACCAGTCACCACCTTCATTAGACTTGACACTTTCAGTAATGGCTGACCCAGACAAGTTAA
TGTCTCCAGCACCTGAAGTTTCTTTAATATATTTACATTTTGAACTAATGGGCTCTGAATGAAA
TATGTCCTGTTGCATACTTTCAGTTTCAGGAGCCTTTCTTCTGAAGTCACGATCCATATTAACT
GTCAAAGCAGTCTCTGGGGTTTCTTTATGTGTAATAATATCACCGGCTTTTCTTCTACGGCCAT
TTTGTACACCCATATTTGAGCTCCTTGAATCAATCACACACACCAATTTATCATCTTCTCCACA
ATCCACAGCCAGACCACCTCGTTCTATGTCTTGAGGCTCGACAATTGTTAAATCAGTAGTGAGA
ACTTTACTGAGATTGGGACCAGAATCCACTTTAGGGATATGCCTAGGGACAACAACAGGGATGA
ACGACGATCCTTCACTACTATATGCAGATATTTTGGACCTGGATCTATTTGTGGGAGCAACCGA
TGGTACTGAGTTACGATGGAATGCTCTAGCACCTATAGAGAGATCCACTTTGGAGCGAATTCTT
GGAGTTGTTATAGGCACAGCATAATCTGTCTGCCTCTTCTGGTCATCAGAGAACTTTGGGTTCA
ATCTAACCCTAGGAGAAACAACTGGTAGAGAATCAGATCTTGTGAGCCGAATATTGCTTGTTAT
AGGTTCTTTTGGTAGTTTCTTTGTCACTGCAGAAGAAGCTGGAACAGGAACTTCTTTTGAAGCA
GACATTGAGAGTTTAAGCAAAGTATCGGAAGATGCTTCCTTGGCTGCGGTTTCGAGAAATAGCA
AAATATACATAGTTTTAGGGTGAAGAATCATAACTCAAGGATAATGGATGAAGAAAAATTATAT
TGATGTTATACGCCAAATGATAATTGTTTACCTGGGCTTCTGGAAACTGATAACCTTCCCAACA
CTGATGATATGCTATTATCAGCCTGTATTGACCTATTTACGCTTTCATTCAAATGTGCTTCAGC
AATGCTAACAGCATACGGTTCAATTTT
Conservation Information
Conserved circRNAs osi_circ_002874* osi_circ_008562
PMCS 0.333359811
Functional Information
Coding potential Y
Potential coding position 18801390-18800314(+)
18801346-18800273(+)
18801151-18801422(-)
18800253-18801422(-)
Potential amino acid sequence MCFSNANSIRFNFHVQQRVFHLNPLNVSIQTLFFC*(+)
MLLSACIDLFTLSFKCASAMLTAYGSIFMFNSVFFT*(+)
MSASKEVPVPASSAVTKKLPKEPITSNIRLTRSDSLPVVSPRVRLNPKFSDDQKRQTDYAVPIT
TPRIRSKVDLSIGARAFHRNSVPSVAPTNRSRSKISAYSSEGSSFIPVVVPRHIPKVDSGPNLS
KVLTTDLTIVEPQDIERGGLAVDCGEDDKLVCVIDSRSSNMGVQNGRRRKAGDIITHKETPETA
LTVNMDRDFRRKAPETESMQQDIFHSEPISSKCKYIKETSGAGDINLSGSAITESVKSNEGGDW
YNASSFVKPNLTVGRNPETSYINRRTMFGLRHSTDSSEKHAVEHEN*(-)
MKIEPYAVSIAEAHLNESVNRSIQADNSISSVLGRLSVSRSPAKEASSDTLLKLSMSASKEVPV
PASSAVTKKLPKEPITSNIRLTRSDSLPVVSPRVRLNPKFSDDQKRQTDYAVPITTPRIRSKVD
LSIGARAFHRNSVPSVAPTNRSRSKISAYSSEGSSFIPVVVPRHIPKVDSGPNLSKVLTTDLTI
VEPQDIERGGLAVDCGEDDKLVCVIDSRSSNMGVQNGRRRKAGDIITHKETPETALTVNMDRDF
RRKAPETESMQQDIFHSEPISSKCKYIKETSGAGDINLSGSAITESVKSNEGGDWYNASSFVKP
NLTVGRNPETSYINRRTMFGLRHSTDSSEKHAVEHEN*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017