Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d038097_circ_g.3 |
ID in PlantcircBase | zma_circ_009100 |
Alias | zma_circ_0002366 |
Organism | Zea mays |
Position | chr6: 147750906-147771488 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d038097 |
Parent gene annotation |
Probable transmembrane GTPase FZO-like chloroplastic |
Parent gene strand | + |
Alternative splicing | Zm00001d038097_circ_g.1 Zm00001d038097_circ_g.2 Zm00001d038097_circ_g.4 Zm00001d038097_circ_g.5 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d038097_T001:3 Zm00001d038097_T003:4 Zm00001d038097_T002:4 Zm00001d038097_T004:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.093498311 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
147751072-147771485(+) 147771419-147750936(+) |
Potential amino acid sequence |
MCYLSVPILKEMNLVDTPGTNVILQRQQRLTEEYVPRADLVLFVLSSDRPLTESEVGFLQYVQQ WKKKVVFILNKLDLYRNSNELEEATAFVKENAMKLLTAEDVTLFPVSSRSALEAKLSYSKNSDG KHSTEAMYNDPRWRSSKFFELEDYLLSFLDSSTENGKERVRLKLETPIGIADRLLTSCQRLVKL EYEKAVEDLASIKDLVYGANNYAIKLKSDSSSWQNQISSLGEFNSGKSTFINALLGRQYLQEGV VPTTNEITLLSYSEVESENFERCERHPDGQFMCYLSVPILKEMNLVDTPGTNVILQRQQRLTEE YVPRADLVLFVLSSDRPLTESEVGFLQYVQQWKKKVVFILNKLDLYRNSNELEEATAFVKENAM KLLTAEDVTLFPVSSRSALEAKLSYSKNSDGKHSTEAMYNDPRWRSSKFFELEDYLLSFLDSST ENGKERVRLKLETPIGIADRLLTSCQRLVKLEYEKAVEDLASIKDLVYGANNYAIKLKSDSSSW QNQISSLGEFNSGKSTFINALLGRQYLQEGVVPTTNEITLLSYSEVESENFERCERHPDGQFMC YLSVPILKEMNLVDTPGTNVILQRQQRLTEEYVPRADLVLFVLSSDRPLTESEVGFLQYVQQWK KKVVFILNKLDLYRNSNELEEATAFVKENAMKLLTAEDVTLFPVSSRSALEAKLSYSKNSDGKH STEAMYNDPRWRSSKFFELEDYLLSFLDSSTENGKERVRLKLETPIGIADRLLTSCQRLVKLEY EKAVEDLASIKDLVYGANNYAIKLKSDSSSWQNQISSLGEFNSGKSTFINALLGRQYLQEGVVP TTNEITLLSYSEVESENFERCERHPDGQFMCYLSVPILKEMNLVDTPGTNVILQRQQRLTEEYV PRADLVLFVLSSDRPLTESEVGFLQYVQQWKKKVVFILNKLDLYRNSNELEEATAFVKENAMKL LTAEDVTLFPVSSRSALEAKLSYSKNSDGKHSTEAMYNDPRWRSSKFFELEDYLLSFLDSSTEN GKERVRLKLETPIGIADRLLTSCQRLVKLEYEKAVEDLASIKDLVYGANNYAIKLKSDSSSWQN QISSL(+) MVQTIMPSNLSLIAVPGRTRFRLSVNLTQESQLL*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |