Plant Circular RNA Database

Detail information of Zm00001d038097_circ_g.5

			
						 General Information
					
						CircRNA Name
						Zm00001d038097_circ_g.5
					
						ID in PlantcircBase
						zma_circ_009102
					
						Alias
						Zm06circ00081, zma_circ_0002271
					
						Organism
						
							Zea mays						
					
						Position
						
							chr6: 147770847-147773764  JBrowse»						
					
						Reference genome
						
							AGPv4.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRI2, find_circ
					
						Parent gene
						
							Zm00001d038097						
					
						Parent gene annotation
						
							Probable transmembrane GTPase FZO-like chloroplastic
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Zm00001d038097_circ_g.1 Zm00001d038097_circ_g.2 Zm00001d038097_circ_g.3 Zm00001d038097_circ_g.4 						
					
						Support reads
						NA
					
						Tissues
						leaf, endosperm, root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Zm00001d038097_T004:3
Zm00001d038097_T003:4
Zm00001d038097_T002:4

General Information
CircRNA Name	Zm00001d038097_circ_g.5
ID in PlantcircBase	zma_circ_009102
Alias	Zm06circ00081, zma_circ_0002271
Organism	Zea mays
Position	chr6: 147770847-147773764 JBrowse»
Reference genome	AGPv4.38
Type	e-circRNA
Identification method	CIRI2, find_circ
Parent gene	Zm00001d038097
Parent gene annotation	Probable transmembrane GTPase FZO-like chloroplastic
Parent gene strand	+
Alternative splicing	Zm00001d038097_circ_g.1 Zm00001d038097_circ_g.2 Zm00001d038097_circ_g.3 Zm00001d038097_circ_g.4
Support reads	NA
Tissues	leaf, endosperm, root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Zm00001d038097_T004:3 Zm00001d038097_T003:4 Zm00001d038097_T002:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TGGGCTTGTTAATGAAGGGGAGAAACTCACCATAAAGGCACTGGAAGGCTTCAATGCCAGTGCT
GCCGCCAAAGATTTTGAAGAGGAAATTCGAGAATTGgttggatttcttcagtatgtccagcagt
ggaagaagaaagttgtatttattctaaataaattggacctctatcggaacagcaatgaggtttg
gtgttgta

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 930
Transcript exons: 147770847-147770933,147771045-147771488,147772315-147772
482,147773534-147773764
GTTGGATTTCTTCAGTATGTCCAGCAGTGGAAGAAGAAAGTTGTATTTATTCTAAATAAATTGG
ACCTCTATCGGAACAGCAATGAGCTTGAAGAAGCTACTGCATTTGTCAAGGAAAATGCAATGAA
ATTGCTTACCGCAGAGGATGTCACACTGTTTCCTGTATCTTCACGCTCTGCTCTGGAAGCCAAA
CTTTCATATTCCAAAAACAGTGATGGAAAGCATTCAACCGAAGCTATGTATAATGATCCTAGAT
GGAGAAGCAGCAAATTTTTTGAACTTGAGGATTACTTACTGAGTTTCTTAGATAGTTCAACGGA
AAATGGAAAAGAAAGGGTCCGGCTGAAACTTGAAACACCAATAGGCATTGCAGATCGATTGTTA
ACTTCGTGTCAAAGGCTGGTGAAACTAGAATATGAAAAGGCTGTTGAAGACTTAGCATCCATCA
AGGATCTTGTTTATGGTGCAAACAATTATGCCATCAAACTTAAGTCTGATAGCAGTTCCTGGCA
GAACCAGATTTCGTCTCTCATTGAGAGAGCAAAAGGTCGAGCAGTTACACTCATGGAATCTACA
CTTCAGCTGTCAAATATTGACCTTATTTTTGCATACACGATCAAAGGAAAAACAGGCAGTTCCA
TGAGAGCCACATCATTTGTTCAGAATGATATTCTGAGTCCAACCCTTGATGATGCTGTGAATTT
ACTAGGTGACTACTCGACATGGTTGAGTTCTAGCAATACCCGCGAAGCAAATGTATATTTGGAG
TGTTTCTGTGAAAGATGGGATGCACTGGTTGCTCCGGAAGAAAGGGCTCTGTTAGATCCAAATG
GGCTTGTTAATGAAGGGGAGAAACTCACCATAAAGGCACTGGAAGGCTTCAATGCCAGTGCTGC
CGCCAAAGATTTTGAAGAGGAAATTCGAGAATTG
						
					

						Genomic sequence
						
							GTTGGATTTCTTCAGTATGTCCAGCAGTGGAAGAAGAAAGTTGTATTTATTCTAAATAAATTGG
ACCTCTATCGGAACAGCAATGAGGTTTGGTGTTGTAACATCATTTCTGCACCATTGAAATCAAA
GCAAGATTTATTTTGTTCCTAATTGCTTGTTTCTAATTCATTGCCTTGTTTCTCAATCTGATGT
GTATAGCTTGAAGAAGCTACTGCATTTGTCAAGGAAAATGCAATGAAATTGCTTACCGCAGAGG
ATGTCACACTGTTTCCTGTATCTTCACGCTCTGCTCTGGAAGCCAAACTTTCATATTCCAAAAA
CAGTGATGGAAAGCATTCAACCGAAGCTATGTATAATGATCCTAGATGGAGAAGCAGCAAATTT
TTTGAACTTGAGGATTACTTACTGAGTTTCTTAGATAGTTCAACGGAAAATGGAAAAGAAAGGG
TCCGGCTGAAACTTGAAACACCAATAGGCATTGCAGATCGATTGTTAACTTCGTGTCAAAGGCT
GGTGAAACTAGAATATGAAAAGGCTGTTGAAGACTTAGCATCCATCAAGGATCTTGTTTATGGT
GCAAACAATTATGCCATCAAACTTAAGTCTGATAGCAGTTCCTGGCAGAACCAGATTTCGTCTC
TCGTAGGTGTTTCAAATACTACTAGTTATTTTTTATTTATTTATACAAATGTGCTCCCCCTTTT
ACCAAAATATAAGCTGTGTTTCCCCTGCCTTCAATGCAAAATAGTGGTTATATGCAACTTGTGA
TACTGCCTATTTTTCTTGCTTGTAATACCTCTGATCCCAAATGCAAATCTAGCCTGCTTCAGTG
CACCAAATATAATAAATCCATAACGATTCCAATGCATCCTTTTGTCTTATTCTTCCTTGTCTAA
CCTTACTTAGATGCACACTAATCGATGGAGTAAGCCTGCCAGTTGCCACCCATCTTAACTCCAG
TAATGATTGATGAGTAATATGGCCATCATACCGTCTCGCCATAATACTTGTGCCAGGCCCAAAT
GGACTTATATTCGGGATTGTTGGGAGTACTTAATATTTCTGGCCTCAACATGTATAATTAACAG
TTAGTGCCCACACCCACACTATACTTTCCAGGGGCACATGAGAATAATTTTGGTCATTTTCGAC
GTGCCTTTTCCATTCACTTCTGGCCTTTTAAGACAGTGTCCAGCAGTTTAACCATATGGTTACC
CAAAACACTGTTTTGCACTGTTTTATGTTGTAGACTGCACAGTTCATAGAGTGGGGTTTGAATA
TGGGGATGAGGATGAGTAAGGTGCTGGAGATAGTCTAAATGTACATATGGTTAGGTATACACTC
TTCAACTTCTCATAAATGCATCTATTGCTGGCCTAGTATTGGTATTTTGTGGAAGTCCTTTGAG
TGCAATATGCTTAATACTCCTAGATTGAGATATTAGTAACATACATCTTCCTTCTTGCAGATTG
AGAGAGCAAAAGGTCGAGCAGTTACACTCATGGAATCTACACTTCAGCTGTCAAATATTGACCT
TATTTTTGCATACACGATCAAAGGAAAAACAGGCAGTTCCATGAGAGCCACATCATTTGTTCAG
AATGATATTCTGAGTCCAACCCTTGATGATGCTGTGGTATGTTTGGCATTGAACTTTCTCCTAG
TTTTATCATATTCTGATCCACATATGCTCGCAAGCATATAATTCACACCTGAATGCTAAATGTG
CAGCAATCTACACATATAAATCGTTGTACTATGCGATCATAATTCTCCCAGAACAGCTTTATTT
TTCCGTAACTTCGAGTATTGCATTATGGTATCACCAACTATACACAGTATAACTATTTTAGACA
AACTGTTATTGGAAGTGATCCCAAGTTAATCGTATTGACTCGTAATTGCATTGATTCAACAAAT
CTTTCTTTATCAAAACTTTTGGTGCTGATTTTATTGATTAATTCTTCAATTAGCTGGTTACCTC
CCACAATATCATATGCTTTACAAGGATCATCATCTGGGCAGTCTGCAGACCCCCCCCCCTAGTC
TTTTAGATGTTCCTTTAATAGAACTGGGGTTTTTGAGTGTATGTAGTAAGCAATCACATGGATG
GCCACCTTGTATCAGATCTGAACCGTTTGAGCAATTCATATTAATTCACTTTAGCCATTCGCAG
CATGGTTAATATTTTTTATAGCTATCATAATGAGTACTCATTTTTGATATATTATTATGTCATT
TTTTTGTGCACATTCTGTTCTAAAGTAAATTTCATGGAACTATACATGGTTTATATCATCAGAA
AGCTATACTTTTTCTGAACTCATTTTGAATAGCTTTGCCTATATGTCACAAAACTACACTTTTT
TGTAACATAGTGTGGGTATCAACTGGACCCCCCCACACATGAGATATACAGGTGGTGTTCATTA
ATCATCCAAACAGATGATAGACATGGAACTGAGATGTCAATTGATGTCCAAATTAACGGAATTA
GTGAAAGGGTGTAGTTTTGTGACAATAAGTGCAAAGATGTGTGGTTCTTTGCAGTTGGCTAAAG
CATGGGTAATTTTGTGATAATAGGGACCACATAAGTATAGTTATCTGAAATTTGCTCGATATTC
TAGCTATTTTCTTTACGATGCTTATGTATGCATTTTATCAGAAAAAATCCTTTCTTTTGCTAGA
ATTTACTAGGTGACTACTCGACATGGTTGAGTTCTAGCAATACCCGCGAAGCAAATGTATATTT
GGAGTGTTTCTGTGAAAGATGGGATGCACTGGTTGCTCCGGAAGAAAGGGCTCTGTTAGATCCA
AATGGGCTTGTTAATGAAGGGGAGAAACTCACCATAAAGGCACTGGAAGGCTTCAATGCCAGTG
CTGCCGCCAAAGATTTTGAAGAGGAAATTCGAGAATTG
						
					

			
		

Sequences
Splice junction sequence	TGGGCTTGTTAATGAAGGGGAGAAACTCACCATAAAGGCACTGGAAGGCTTCAATGCCAGTGCT GCCGCCAAAGATTTTGAAGAGGAAATTCGAGAATTGgttggatttcttcagtatgtccagcagt ggaagaagaaagttgtatttattctaaataaattggacctctatcggaacagcaatgaggtttg gtgttgta
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 930 Transcript exons: 147770847-147770933,147771045-147771488,147772315-147772 482,147773534-147773764 GTTGGATTTCTTCAGTATGTCCAGCAGTGGAAGAAGAAAGTTGTATTTATTCTAAATAAATTGG ACCTCTATCGGAACAGCAATGAGCTTGAAGAAGCTACTGCATTTGTCAAGGAAAATGCAATGAA ATTGCTTACCGCAGAGGATGTCACACTGTTTCCTGTATCTTCACGCTCTGCTCTGGAAGCCAAA CTTTCATATTCCAAAAACAGTGATGGAAAGCATTCAACCGAAGCTATGTATAATGATCCTAGAT GGAGAAGCAGCAAATTTTTTGAACTTGAGGATTACTTACTGAGTTTCTTAGATAGTTCAACGGA AAATGGAAAAGAAAGGGTCCGGCTGAAACTTGAAACACCAATAGGCATTGCAGATCGATTGTTA ACTTCGTGTCAAAGGCTGGTGAAACTAGAATATGAAAAGGCTGTTGAAGACTTAGCATCCATCA AGGATCTTGTTTATGGTGCAAACAATTATGCCATCAAACTTAAGTCTGATAGCAGTTCCTGGCA GAACCAGATTTCGTCTCTCATTGAGAGAGCAAAAGGTCGAGCAGTTACACTCATGGAATCTACA CTTCAGCTGTCAAATATTGACCTTATTTTTGCATACACGATCAAAGGAAAAACAGGCAGTTCCA TGAGAGCCACATCATTTGTTCAGAATGATATTCTGAGTCCAACCCTTGATGATGCTGTGAATTT ACTAGGTGACTACTCGACATGGTTGAGTTCTAGCAATACCCGCGAAGCAAATGTATATTTGGAG TGTTTCTGTGAAAGATGGGATGCACTGGTTGCTCCGGAAGAAAGGGCTCTGTTAGATCCAAATG GGCTTGTTAATGAAGGGGAGAAACTCACCATAAAGGCACTGGAAGGCTTCAATGCCAGTGCTGC CGCCAAAGATTTTGAAGAGGAAATTCGAGAATTG
Genomic sequence	GTTGGATTTCTTCAGTATGTCCAGCAGTGGAAGAAGAAAGTTGTATTTATTCTAAATAAATTGG ACCTCTATCGGAACAGCAATGAGGTTTGGTGTTGTAACATCATTTCTGCACCATTGAAATCAAA GCAAGATTTATTTTGTTCCTAATTGCTTGTTTCTAATTCATTGCCTTGTTTCTCAATCTGATGT GTATAGCTTGAAGAAGCTACTGCATTTGTCAAGGAAAATGCAATGAAATTGCTTACCGCAGAGG ATGTCACACTGTTTCCTGTATCTTCACGCTCTGCTCTGGAAGCCAAACTTTCATATTCCAAAAA CAGTGATGGAAAGCATTCAACCGAAGCTATGTATAATGATCCTAGATGGAGAAGCAGCAAATTT TTTGAACTTGAGGATTACTTACTGAGTTTCTTAGATAGTTCAACGGAAAATGGAAAAGAAAGGG TCCGGCTGAAACTTGAAACACCAATAGGCATTGCAGATCGATTGTTAACTTCGTGTCAAAGGCT GGTGAAACTAGAATATGAAAAGGCTGTTGAAGACTTAGCATCCATCAAGGATCTTGTTTATGGT GCAAACAATTATGCCATCAAACTTAAGTCTGATAGCAGTTCCTGGCAGAACCAGATTTCGTCTC TCGTAGGTGTTTCAAATACTACTAGTTATTTTTTATTTATTTATACAAATGTGCTCCCCCTTTT ACCAAAATATAAGCTGTGTTTCCCCTGCCTTCAATGCAAAATAGTGGTTATATGCAACTTGTGA TACTGCCTATTTTTCTTGCTTGTAATACCTCTGATCCCAAATGCAAATCTAGCCTGCTTCAGTG CACCAAATATAATAAATCCATAACGATTCCAATGCATCCTTTTGTCTTATTCTTCCTTGTCTAA CCTTACTTAGATGCACACTAATCGATGGAGTAAGCCTGCCAGTTGCCACCCATCTTAACTCCAG TAATGATTGATGAGTAATATGGCCATCATACCGTCTCGCCATAATACTTGTGCCAGGCCCAAAT GGACTTATATTCGGGATTGTTGGGAGTACTTAATATTTCTGGCCTCAACATGTATAATTAACAG TTAGTGCCCACACCCACACTATACTTTCCAGGGGCACATGAGAATAATTTTGGTCATTTTCGAC GTGCCTTTTCCATTCACTTCTGGCCTTTTAAGACAGTGTCCAGCAGTTTAACCATATGGTTACC CAAAACACTGTTTTGCACTGTTTTATGTTGTAGACTGCACAGTTCATAGAGTGGGGTTTGAATA TGGGGATGAGGATGAGTAAGGTGCTGGAGATAGTCTAAATGTACATATGGTTAGGTATACACTC TTCAACTTCTCATAAATGCATCTATTGCTGGCCTAGTATTGGTATTTTGTGGAAGTCCTTTGAG TGCAATATGCTTAATACTCCTAGATTGAGATATTAGTAACATACATCTTCCTTCTTGCAGATTG AGAGAGCAAAAGGTCGAGCAGTTACACTCATGGAATCTACACTTCAGCTGTCAAATATTGACCT TATTTTTGCATACACGATCAAAGGAAAAACAGGCAGTTCCATGAGAGCCACATCATTTGTTCAG AATGATATTCTGAGTCCAACCCTTGATGATGCTGTGGTATGTTTGGCATTGAACTTTCTCCTAG TTTTATCATATTCTGATCCACATATGCTCGCAAGCATATAATTCACACCTGAATGCTAAATGTG CAGCAATCTACACATATAAATCGTTGTACTATGCGATCATAATTCTCCCAGAACAGCTTTATTT TTCCGTAACTTCGAGTATTGCATTATGGTATCACCAACTATACACAGTATAACTATTTTAGACA AACTGTTATTGGAAGTGATCCCAAGTTAATCGTATTGACTCGTAATTGCATTGATTCAACAAAT CTTTCTTTATCAAAACTTTTGGTGCTGATTTTATTGATTAATTCTTCAATTAGCTGGTTACCTC CCACAATATCATATGCTTTACAAGGATCATCATCTGGGCAGTCTGCAGACCCCCCCCCCTAGTC TTTTAGATGTTCCTTTAATAGAACTGGGGTTTTTGAGTGTATGTAGTAAGCAATCACATGGATG GCCACCTTGTATCAGATCTGAACCGTTTGAGCAATTCATATTAATTCACTTTAGCCATTCGCAG CATGGTTAATATTTTTTATAGCTATCATAATGAGTACTCATTTTTGATATATTATTATGTCATT TTTTTGTGCACATTCTGTTCTAAAGTAAATTTCATGGAACTATACATGGTTTATATCATCAGAA AGCTATACTTTTTCTGAACTCATTTTGAATAGCTTTGCCTATATGTCACAAAACTACACTTTTT TGTAACATAGTGTGGGTATCAACTGGACCCCCCCACACATGAGATATACAGGTGGTGTTCATTA ATCATCCAAACAGATGATAGACATGGAACTGAGATGTCAATTGATGTCCAAATTAACGGAATTA GTGAAAGGGTGTAGTTTTGTGACAATAAGTGCAAAGATGTGTGGTTCTTTGCAGTTGGCTAAAG CATGGGTAATTTTGTGATAATAGGGACCACATAAGTATAGTTATCTGAAATTTGCTCGATATTC TAGCTATTTTCTTTACGATGCTTATGTATGCATTTTATCAGAAAAAATCCTTTCTTTTGCTAGA ATTTACTAGGTGACTACTCGACATGGTTGAGTTCTAGCAATACCCGCGAAGCAAATGTATATTT GGAGTGTTTCTGTGAAAGATGGGATGCACTGGTTGCTCCGGAAGAAAGGGCTCTGTTAGATCCA AATGGGCTTGTTAATGAAGGGGAGAAACTCACCATAAAGGCACTGGAAGGCTTCAATGCCAGTG CTGCCGCCAAAGATTTTGAAGAGGAAATTCGAGAATTG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.165044788

Conservation Information
Conserved circRNAs	NA
PMCS	0.165044788

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							147771082-147773761(+)
147773719-147770898(+)
						
						Potential amino acid sequence
						
							MKLLTAEDVTLFPVSSRSALEAKLSYSKNSDGKHSTEAMYNDPRWRSSKFFELEDYLLSFLDSS
TENGKERVRLKLETPIGIADRLLTSCQRLVKLEYEKAVEDLASIKDLVYGANNYAIKLKSDSSS
WQNQISSLIERAKGRAVTLMESTLQLSNIDLIFAYTIKGKTGSSMRATSFVQNDILSPTLDDAV
NLLGDYSTWLSSSNTREANVYLECFCERWDALVAPEERALLDPNGLVNEGEKLTIKALEGFNAS
AAAKDFEEEIRELVGFLQYVQQWKKKVVFILNKLDLYRNSNELEEATAFVKENAMKLLTAEDVT
LFPVSSRSALEAKLSYSKNSDGKHSTEAMYNDPRWRSSKFFELEDYLLSFLDSSTENGKERVRL
KLETPIGIADRLLTSCQRLVKLEYEKAVEDLASIKDLVYGANNYAIKLKSDSSSWQNQISSLIE
RAKGRAVTLMESTLQLSNIDLIFAYTIKGKTGSSMRATSFVQNDILSPTLDDAVNLLGDYSTWL
SSSNTREANVYLECFCERWDALVAPEERALLDPNGLVNEGEKLTIKALEGFNASAAAKDFEEEI
RELVGFLQYVQQWKKKVVFILNKLDLYRNSNELEEATAFVKENAMKLLTAEDVTLFPVSSRSAL
EAKLSYSKNSDGKHSTEAMYNDPRWRSSKFFELEDYLLSFLDSSTENGKERVRLKLETPIGIAD
RLLTSCQRLVKLEYEKAVEDLASIKDLVYGANNYAIKLKSDSSSWQNQISSLIERAKGRAVTLM
ESTLQLSNIDLIFAYTIKGKTGSSMRATSFVQNDILSPTLDDAVNLLGDYSTWLSSSNTREANV
YLECFCERWDALVAPEERALLDPNGLVNEGEKLTIKALEGFNASAAAKDFEEEIRELVGFLQYV
QQWKKKVVFILNKLDLYRNSNELEEATAFVKENAMKLLTAEDVTLFPVSSRSALEAKLSYSKNS
DGKHSTEAMYNDPRWRSSKFFELEDYLLSFLDSSTENGKERVRLKLETPIGIADRLLTSCQRLV
KLEYEKAVEDLASIKDLVYGANNYAIKLKSDSSSWQNQISSLIERAKGRAVTLMESTLQLSNID
LIFAYTIKGKTGSSMRATSFVQNDILSPTLDDAVNLLGDYSTWLSSSNTREANVYLECFCERWD
ALVAPEERALLDPNGLVNEGEKLTIKALEGFNASAAAKDFEEEIREL(+)
MPVLPPKILKRKFENWLDFFSMSSSGRRKLYLF*(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	147771082-147773761(+) 147773719-147770898(+)
Potential amino acid sequence	MKLLTAEDVTLFPVSSRSALEAKLSYSKNSDGKHSTEAMYNDPRWRSSKFFELEDYLLSFLDSS TENGKERVRLKLETPIGIADRLLTSCQRLVKLEYEKAVEDLASIKDLVYGANNYAIKLKSDSSS WQNQISSLIERAKGRAVTLMESTLQLSNIDLIFAYTIKGKTGSSMRATSFVQNDILSPTLDDAV NLLGDYSTWLSSSNTREANVYLECFCERWDALVAPEERALLDPNGLVNEGEKLTIKALEGFNAS AAAKDFEEEIRELVGFLQYVQQWKKKVVFILNKLDLYRNSNELEEATAFVKENAMKLLTAEDVT LFPVSSRSALEAKLSYSKNSDGKHSTEAMYNDPRWRSSKFFELEDYLLSFLDSSTENGKERVRL KLETPIGIADRLLTSCQRLVKLEYEKAVEDLASIKDLVYGANNYAIKLKSDSSSWQNQISSLIE RAKGRAVTLMESTLQLSNIDLIFAYTIKGKTGSSMRATSFVQNDILSPTLDDAVNLLGDYSTWL SSSNTREANVYLECFCERWDALVAPEERALLDPNGLVNEGEKLTIKALEGFNASAAAKDFEEEI RELVGFLQYVQQWKKKVVFILNKLDLYRNSNELEEATAFVKENAMKLLTAEDVTLFPVSSRSAL EAKLSYSKNSDGKHSTEAMYNDPRWRSSKFFELEDYLLSFLDSSTENGKERVRLKLETPIGIAD RLLTSCQRLVKLEYEKAVEDLASIKDLVYGANNYAIKLKSDSSSWQNQISSLIERAKGRAVTLM ESTLQLSNIDLIFAYTIKGKTGSSMRATSFVQNDILSPTLDDAVNLLGDYSTWLSSSNTREANV YLECFCERWDALVAPEERALLDPNGLVNEGEKLTIKALEGFNASAAAKDFEEEIRELVGFLQYV QQWKKKVVFILNKLDLYRNSNELEEATAFVKENAMKLLTAEDVTLFPVSSRSALEAKLSYSKNS DGKHSTEAMYNDPRWRSSKFFELEDYLLSFLDSSTENGKERVRLKLETPIGIADRLLTSCQRLV KLEYEKAVEDLASIKDLVYGANNYAIKLKSDSSSWQNQISSLIERAKGRAVTLMESTLQLSNID LIFAYTIKGKTGSSMRATSFVQNDILSPTLDDAVNLLGDYSTWLSSSNTREANVYLECFCERWD ALVAPEERALLDPNGLVNEGEKLTIKALEGFNASAAAKDFEEEIREL(+) MPVLPPKILKRKFENWLDFFSMSSSGRRKLYLF*(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Han et al., 2020; Ma et al., 2021b

circRNA

Detail information of Zm00001d038097_circ_g.5

Address

Any questions?

Supported by