Detail information of Zm00001d038097_circ_g.1


General Information
CircRNA Name Zm00001d038097_circ_g.1
ID in PlantcircBase zma_circ_002350
Alias circ2012
Organism Zea mays
Position chr6: 147747683-147752273  JBrowse»
Reference genome AGPv4.38
Type   ei-circRNA
Identification method CIRCexplor2
Parent gene Zm00001d038097
Parent gene annotation Probable transmembrane GTPase FZO-like chloroplastic
Parent gene strand +
Alternative splicing Zm00001d038097_circ_g.2 Zm00001d038097_circ_g.3 Zm00001d038097_circ_g.4 Zm00001d038097_circ_g.5
Support reads 4
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered Zm00001d038097_T002:4
Zm00001d038097_T003:3
Zm00001d038097_T001:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATTCTTCAGAGGCAGCAACGACTCACTGAAGAATACGTGCCACGAGCTGATTTGGTGCTCTTT
GTCCTATCATCAGATAGACCATTAACTGAAAGTGAGggtattcctgctattgttgcaaggagta
tgatgatgaaatcaaatgctgactccatatatctccctattgttgctagaaggatacaatctgc
aaactctg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTATTCCTGCTATTGTTGCAAGGAGTATGATGATGAAATCAAATGCTGACTCCATATATCTCC
CTATTGTTGCTAGAAGGATACAATCTGCAAACTCTGCATTAAGCGCTTCAAGTTCTGAAGGGGC
TGATTTTCTGATTGTAAATACTGGCAGTGGTGATTTTGTGGATGTTATAAATGATGTTGTTGGT
CAACATGTGAAGATTCCGATTTTCGTCACGTTGAATCATTTAAGTGAAGGAACTTATTCTGACT
TCACATCCAGGTTGCTCCAATCTGGTGCATCTGGAGTTGTTACATCCTTAGCTGGCATGGAACT
CCTCAATGACGATCTTATAAAAAAAGACTTCACAAAGGTGGGCTCAGCTGAGGAACTCCCACAA
GCGAGTTACTCTTCTGCTGGGATGCTGGAAGATGTTAATAATGTAATGGTCCTAACTCGTGATT
GCGAGAAGACTAAAGTTGCTGGATTTACAAAATTGGATGAAGAAGTGATAAAGTTGATAGAAAT
AGAAAAGCCTATTCTGAACGAAGCTATCACTATTATCCGCAAGGCAGCACCAATGGTGATCATC
TTACGTTACACATTTGGTAGTTGAAGATGCCCTGGAATGAATTCAATTATACTTCATCTCACCA
TCTTTAGCATATTTTGACTTGAATGTAATTGCCGATTTGTCATCACACAGATGGAGGAGGTTGA
GCTTCTAGTGGATGCTGCTTCTCGCCTGAGTGAGCCATTTTTGTTGGTTATTGTGGTAATTTTG
GGTTTACATCAAGTATTGATTTCAGTAACATCCATTACATAGCTCATTGATTTCAGCAACGTTC
ATTACATAGCTCATTGATTTCAGCAACGTCCATTACTAGCTCATATTTAAATGACATGCATGCA
TACTACTGACGCAAATGACATTAGACATGATTATTGTGTTATGTTATATAAATCATCAAATGAT
GCTATAGGGAAGCCACATTGATATGGCTTGCATCTCCCTCAAAAGCAATCGACATTCTTAATAT
ATCTTCTTTTCTCAAACAAGGAATACTAGTATGTTATGAATATTTTGTGCATGTATTTTTTACC
TATGTGGTTTGAAATATTTGTTTTCAATATCTTACATTTCATGAAATTCCCATTTAATTTCTAC
TATCATTTAGTGCCTTTTTTGGTTCATTTTGCCATCTACCTCCTTACATATTCACATTTTGTAT
GGGTGGAAATTATTGTTTTCAAGTCATCTAGTCGAACCTAGTCGTATAACTACCGACCAGTCGA
CTAGTTGCGATTAGTCATCGACCAGACCGACTAATCGAGCCTAATGCAAGTAAAGCAGAGCAGC
AAGACAAACTCATCTTTTCGGTGTTTGATATCGGCAGATACACAAGAGGTAGGCCTAGATGATG
AACCTTGAATACGGGGGGCATCGCCTGGGGCGACAATAGTGCAGCACGGGTGGTCGTCTGGAAC
TGGATCTTGTGGGCGGCGGCATTGCGGGTTTGCGGCAGCACGGACGGTCGTCTAGAATTTGCGG
GCGGCACTGCAATTGGGCGATTGCCTAGAACTGGATCTTGTGTGCGGCAACGACATTGCGGTAG
CACGACCGACCGCCTAGAACTTGCGGGTGACACTGCAAATGTGCGGCAGCACGAATGACTCTAT
GCGATGTGTTCTGGTCTGCCTGTAGCTGGCTGCCTGGTTTGGCAACCCTAAAAGGCCACATTAG
CAATCCATGAGCCCACAGATGCAGCAGCAATGGCAGCCTAGAGCCCACAACTGCATCAACCATA
AATCTCAAAAGCTATCTAAAAACACATGTCCAAGTCCAATCTAGTCGTCCCACACCAAATCGGA
CGACTAGAATTCTGGTCGGTCTAATCGCCTTGGTGGGTCTAGTCGGGTTCAGTTTAATGATTAG
TCCGACTAATCGTGATTAGTTGGATGACTTGAAAACACTATTGGAAAAAAATTTCTTTTATGTG
AGTTCTTCTATAGTCCACCCCTTTTACTAAGAAAATATGCTTATGGATGTCCTCTTCTGGTTCA
ACCGCATACATGTCCACGTGCTAGATGGCCCTTTATTTGCATAAACAAACAAAAAACTCTCCTA
AGCTAACCACATGCGTAGAAGCACATGTAGTATAAGCATACACACTGGGTCGTGTTTATTTTCC
TAACATACTCAGTTTGGTATGAGCCCGTAAGCAAGAGAATTCCCTTATCCGATCAGTGCTACGA
CGATCAACTATGCACTACGGTTAGTCATGATTAATTCCGATTAGACGTGATTAATCAGGCTGAT
CAGTGCCATGGCATCTAGGATAGATGCGCGAGGGAGGCTGATCGGTGGTCGGCGTCGCGGATCC
TGGCGACGGCTGACAACCTTCTTGGCTCGAGCGGAGGGAGGACGCTCCTGCGCCCGACGTCAGG
TGGCCGGAACCACGCGAGGGTCAGAGGGGGAGGAGGTGGTGGCTGGCAGGCGGACCTGGCAGAG
GGCTAGCGACGGCTGTGTGGTGGGAGGAAAAGGAAAACTGGCTCTGTTACCAAGTTGGAATGAG
AGGAAACCCTAACCCTAATCCAGGGTTGGGTGAGTGTTATATAGATCGTTAGATGGGCCAAGCC
CATTACACAGGGGTAGTCAGGTAAATACAAGAGGGCACAAGCCAAACCCTAAACAGGAGTCTAA
CATAGACGGTTTGATAACATTGCACTTGGATGCTTACAAAAACACACGTCACTGACAAAAAGGA
TATCATAACCAAGGGGATCAGTCTACCAACCAAAACTTAAGGTTCTGGGGCAAACAAGCACCTG
CCATGCAACATAAACTACAATCACAATCCACTATTTTCAGGAGTTCCTGAATGCTTGCCAAAAC
TCCCTCAAAACACACAGACATTCCTATGTTTCCGCTTCTTCTTAATATAATGGTATGCAGCTCT
CCTGCATGTTTGTAGAAAAAGCATTCCTATGTTTCCATACTTCCCAGGCCATTAAAATGATGAA
AGAATTCAGCCCCTTCTGTATCTGCTTGGGAACATCTCTGAAAGTGCTTCCCCATCATTTGAAG
AAGTGAGCTGCATCAACTGAAGGCACCCTAGGACAAGGAATACTTGTTCTTCATTATATTATAC
ATATTCCACACTTAGCAACTATTTTTTTTCGCCAAGTAATCATTTTACCACTCATTCTGAACAA
ATCCTCCTGTAATTTTATCTCAGGGTGAATTTAACTCAGGAAAGTCAACTTTTATAAATGCTTT
ACTTGGAAGGCAGTATCTTCAGGAGGGAGTTGTGCCTACGACAAATGAGATCACACTACTATCA
TATTCTGAGGTTGAATCTGAAAACTTTGAACGATGTGAGAGGCATCCAGATGGTCAATTCATGT
GCTATTTATCTGTTCCAATTTTAAAGGAAGTAAGTATTGAATTGCTTTTGACTGTCATGTTGAA
ATTCCTTCTTTGCCTCTTAGATGTATTCATCCAGTTTATTATTCGGTATGTTAAGTTAAACAAG
CTAGCTTTTTCCCTTAGTGCATTAAATTAAATAAGGTAGCTAGGTGGATGCAATTTCCCGTTTC
ACCCAGCTGTAGTTTTTTTCTAAACAAACTAATTTAAGGAGCAGACTTCTTTCTCCCTCCATGC
GCTGTATTTGATTTTTTTTCTCGAAAACACAGGAGAGTCGCGTTTCATTATATTAAGAAGAAGA
GTAAGGGTATGGAATAGACCAAAAAACAAGGACTCCTTATGGATGCCAAAAACAAAGAAACCTA
AAGGAACTCATCTAAGATACAAAACAATAGACGACCTATACCACATTACATAACAATTATGGCC
AAAGACCACACAGCCTGGCAATGCTTGGTGGAGCCTTATCAAAGACACATGTATTCCGATGTTT
CCACAACATCCAAGCACAAGAGAAACCAGGGTGTTGAATCCTTTGTATGGGTGGCACTTGTACC
TCCACCAGTTTCCACCAGTTTTGGAATACCTTATCTTGAAGCCCTGGTGCAACTTGCTGCAGTC
TACCATTGAAAGCACTAAGCAGCATATACCGAACTTCCCTAGAAAAAACACAACTAAGAAGAAT
GTGCTCAATTGTTTCTTCCTCCTGATCACAAAAAGACTGTTCTGGATGTTCCAATCCCCGCCTA
GCCAGACGATCAGCAGTCCAACGTCTGTTCAAGGCTGCCAGCCATAGAAAGAATCTGCATTTGA
TAACGTGTACCACCTGCACATTTTCTGTAGCTACTTGACTATTTGGCTTTTTTGATCAATACCT
ATTACATGTAAATGAAGGTGCCAAGAATAATTGACAATCTTGTTCCACCTTACTTTCTTTTACC
TTCTGTAGTTGCATTACTGTCTCAAGGCCAAATCAGCAGTGCATTTTCCTTCACTTCTTTACTT
CATTTTGCTTTTCATAAGATGCTCCATGTGTACTAATTCACAGATGAATCTAGTTGATACACCT
GGAACAAATGTTATTCTTCAGAGGCAGCAACGACTCACTGAAGAATACGTGCCACGAGCTGATT
TGGTGCTCTTTGTCCTATCATCAGATAGACCATTAACTGAAAGTGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.003358019
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b