Detail information of BGIOSGA016140_circ_g.6


General Information
CircRNA Name BGIOSGA016140_circ_g.6
ID in PlantcircBase osi_circ_014241
Alias Chr04:15495873_15498455(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 13167808-13170383  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA016140
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016140_circ_g.1 BGIOSGA016140_circ_g.2 BGIOSGA016140_circ_g.3 BGIOSGA016140_circ_g.4 BGIOSGA016140_circ_g.5 BGIOSGA016140_circ_g.7 BGIOSGA016140_circ_g.8
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA016140-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGTCAAGTCGATCATTGGATTGAGCCGTATCTCAGGCTAACAATTGATCGGCTGCGTCGTGCA
GTGAAGCCGTATCTGAAAAGCTTACTTGTACAAGTGgaattttttaagcttatgagtgaagttg
agaatgaagatctcgttttcacccttgagacaattgttgacaaatttggtgaagagatggcacc
atatgcac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAATTTTTTAAGCTTATGAGTGAAGTTGAGAATGAAGATCTCGTTTTCACCCTTGAGACAATTG
TTGACAAATTTGGTGAAGAGATGGCACCATATGCACTTGGTTTGTGCCAGAGTTTGGTATGTTG
CCCCTCAGTGCATTGTGTTTAGCCCAATAAGTTCTTCTGTTCCTTTGAACTTCATGTTACTGTT
TTTGATAGGCTGCTGCTTTCTGGAGATGCATGGCTAGTTCAGAAGCTGACGAAGAAGTTGAGGA
CACTGGTGCTTTGGCTGCTGTTGGTTGCTTACGTGCGATAAGCACAATCCTTGAGTCCATTAGT
AGCCTTCCTCATTTGTTTCCCCAAATAGAGCTGACTTTGTTGCCTATTTTACGAAGAATGTTGA
CTTCAGATGGTCAAGGTATAAAATTATTCACTCATAACTATGGATCCACAGTTAAAAAAACCAA
AGGCTCTATCTTTCAAATATGGATCCACATGATTAGATGAGATCATTCACACCAATTTGTATGC
ATGTGCAAAAGGGTCATTTTAAAATGAAGATCCTTGTGGAGGAGGATGGCTGGATGGGTGTACA
AGTAAACAAGCCATCACCCCAACTCTTACTTTGAAAAGAGTAAAGATCAAGATATAGCATATTC
AGTTCAACTAATCAACTAGAATGCACCTTTTCTATTTCATGTCTATTCACTTCATTTACTTAGG
ATGGGTCAATGGGTAGGCTTGACCCATGCTCATCCCTGGTGATATACCTTTAACCTGCTAGATA
CTTGTACAAAGTTACAAACTTACAATTGAATTGTTTGAACTCAAATTGTTATCAAAGGTTTAAG
AGTTGTTTGTTTTAAATTTAATCAGGTTTGGGGTGTTTCTTGCAGTTTTCCGCTGATGCATTTG
ACTCTGTCTTGCAGATGTGTATGAAGAAGTTCTGGAGATAGTCTCCTATATGACATTTTACTCA
CCAACCATTTCACTGGAAATGTGGGGCTTGTGGCCTTTGATGATGGAGGCCCTTAATGATTGGG
CCATTGATTTCTTTGAGAGTAAGTCTAGTTTTGAATGGCAAGCAATTATGTTTGTTTTAAACTG
AGAGTTCTAGATTAAGCATATTCCTGGGTTTTCTTGCAGTTTTATGTTTGTTATATTTGCTTGT
GCTATTTTCCAATGACAATCTTGTTTAGTTGTATGAATGCTTGTAATTTGGAAAGTCATGCATG
ATTTAAAATAATATCTGAATCACCTTGTATTAGTTTCCATGTGCTCACTTCACTAGTTTGTTCA
GTTTGCATGTCATATTATTTTCTGATTATTTTTTTATTTGGTTCGTGCTCATTTATAAAATTCT
TCCAAGTCGCTAATAAAAAATGATTAGGTTTCCTAACCTTAACCTGGATTTTAGCAGCTCAAAC
CTTTTTTTTTGTGTCCAGCTACTAATCTAGTTAGTCTCAGATTATGTTTGGCTAGATCTGCTTT
GTTGTTTTGATTATTAGTAAAAGAACAAACTATTATAGTTGAGGTCGGCTTGCTTATTGCTGCA
CCTATTTTGTGGGTCAACTTATTCCTCACTTAGAATGGTTCGAAAGGCATTTATTGTGTTAAAT
TAATGCTTCCTAACGTGCATGTGTTTGCAAGATTAGACCTTCAACCAATCTAATACCTTGGACC
AAATGCAGCCTTTGCATTGTCTATTCTTACATTATTCATTCGTTAGGATTATATAAGATGGTTA
TGCCACTTAGTAAGGAATTGAATTTATGAAACTAGAACCATCTTGTATTGTTAAGATTCTGTTT
AATTGAATTGAAATTATGATTTCTGTGTGATAGTTTAGCATGCCGGTATCTGGTATCCATTATG
CAAAAGGAAAATTTTGTATTCACATGTGCATCCAGATTTTAGATAAGAACATCAGGAATAGTTG
TGTCATCGTTTGTTCCTTTGAATTGGAATCCTTGTTTTACATATTTGGTATAGTACTAGAAAGT
ATTGAAATGCCAACTGCTTGGTTGTCTATCCTTCAGAATTTTTTTTAGTCAGCTGCTAAGACTG
TTTCTATCTGTAGAAAATTGCTTGGTTCTACCCTCAGGCCACTAGATGGAACTAATCTCCTACC
ATCAACTATATTTTCAGAAGCAATTGTATTATCTTTGACATCCTTTTGCTACATTATTCAATGT
TCTTATTGCCCTGCAGATATTCTGGTACCATTAGACAACTACATTTCCCGTGGCACTGATCAAT
TTATTGCATGCAAAGATCCTGATTATCAGCAAAGCCTATGGAGAGCACTGTCATCTGTGAGTGA
ATTAAATTCATGTTGCATTAAAATTTGCTCTGAAATATTTTGTAAAGTTCCTAGTTCCTGTAAT
TTTTACAGTTGATTACAAATAATTGTAGATTATGACAGACCAAAACATGGAAGATTCTGACATT
ATACCTGCTCCCAAGCTGATTGAAGTCGTTTTTCAAAATTGCAAAGGTCAAGTCGATCATTGGA
TTGAGCCGTATCTCAGGCTAACAATTGATCGGCTGCGTCGTGCAGTGAAGCCGTATCTGAAAAG
CTTACTTGTACAAGTG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021