Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G07890_circ_g.6 |
ID in PlantcircBase | ath_circ_001209 |
Alias | At_ciR695 |
Organism | Arabidpsis thaliana |
Position | chr1: 2437993-2438385 JBrowse» |
Reference genome | TAIR10.38 |
Type | ue-circRNA |
Identification method | CIRCexplorer, KNIFE, PcircRNA_finder, find_circ, CIRI-full |
Parent gene | AT1G07890 |
Parent gene annotation |
MEE6 |
Parent gene strand | + |
Alternative splicing | AT1G07890_circ_g.1 AT1G07890_circ_g.2 AT1G07890_circ_g.3 AT1G07890_circ_g.4 AT1G07890_circ_g.5 AT1G07890_circ_g.7 AT1G07890_circ_g.8 AT1G07890_circ_g.9 AT1G07890_circ_g.10 AT1G07890_circ_g.11 AT1G07890_circ_g.12 AT1G07890_circ_g.13 AT1G07890_circ_g.14 AT1G07890_circ_g.15 AT1G07890_circ_g.16 AT1G07890_circ_g.17 AT1G07890_circ_g.18 |
Support reads | 14/130 |
Tissues | leaf/whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G07890.4:2 AT1G07890.1:2 AT1G07890.7:2 AT1G07890.2:2 AT1G07890.3:2 AT1G07890.6:2 AT1G07890.8:2 AT1G07890.5:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.339129382 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
2438005-2438382(+) |
Potential amino acid sequence |
MTKNYPTVSEDYKKAVEKCRRKLRGLIAEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRFDA EQAHGANSGIHIALRLLDPIREQFPTISFADFHQSLAKMTKNYPTVSEDYKKAVEKCRRKLRGL IAEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRFDAEQAHGANSGIHIALRLLDPIREQFPT ISFADFHQSLAKMTKNYPTVSEDYKKAVEKCRRKLRGLIAEKNCAPIMVRLAWHSAGTFDCQSR TGGPFGTMRFDAEQAHGANSGIHIALRLLDPIREQFPTISFADFHQSLAKMTKNYPTVSEDYKK AVEKCRRKLRGLIAEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRFDAEQAHGANSGIHIAL RLLDPIREQFPTISFADFHQ(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017 |