Detail information of AT1G07890_circ_g.9


General Information
CircRNA Name AT1G07890_circ_g.9
ID in PlantcircBase ath_circ_001212
Alias NA
Organism Arabidpsis thaliana
Position chr1: 2438078-2438273  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method circRNA_finder, find_circ
Parent gene AT1G07890
Parent gene annotation MEE6
Parent gene strand +
Alternative splicing AT1G07890_circ_g.1 AT1G07890_circ_g.2 AT1G07890_circ_g.3 AT1G07890_circ_g.4 AT1G07890_circ_g.5 AT1G07890_circ_g.6 AT1G07890_circ_g.7 AT1G07890_circ_g.8 AT1G07890_circ_g.10 AT1G07890_circ_g.11 AT1G07890_circ_g.12 AT1G07890_circ_g.13 AT1G07890_circ_g.14 AT1G07890_circ_g.15 AT1G07890_circ_g.16 AT1G07890_circ_g.17 AT1G07890_circ_g.18
Support reads 16
Tissues leaf, aerial
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered AT1G07890.3:2
AT1G07890.8:2
AT1G07890.4:2
AT1G07890.2:2
AT1G07890.5:2
AT1G07890.1:2
AT1G07890.7:2
AT1G07890.6:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTTCTCATGGCTGATCTGTCTGGCTAAACTGCAGATGGCACTCTGCTGGAACTTTCGATTGTC
AATCAAGGACTGGAGGTCCATTCGGAACAATGAGgtttgatcgctgagaagaactgtgcaccca
tcatggtccgactcgcgtaagtaactaaccatatttgcttgtggttttgaagtatgtaggatta
tgaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTTGATCGCTGAGAAGAACTGTGCACCCATCATGGTCCGACTCGCGTAAGTAACTAACCATAT
TTGCTTGTGGTTTTGAAGTATGTAGGATTATGAACTTTCTCATGGCTGATCTGTCTGGCTAAAC
TGCAGATGGCACTCTGCTGGAACTTTCGATTGTCAATCAAGGACTGGAGGTCCATTCGGAACAA
TGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.209993917
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017