Detail information of Os04g0626600_circ_ag.3


General Information
CircRNA Name Os04g0626600_circ_ag.3
ID in PlantcircBase osa_circ_025416
Alias NA
Organism Oryza sativa
Position chr4: 31877308-31882021  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method circRNA_finder
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os04g0626600_circ_ag.1 Os04g0626600_circ_ag.2 Os04g0626600_circ_ag.4
Support reads 8
Tissues seed, pistil
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGATAAAAGTGGAGAGTTTGGGAGCATCTATCTCTATCACTTGTAGCATTTGACATTTTGTAAC
CTCGAGGTACTTGAGCTGTTGCATCAGGCAAGGTACcttaaactggattatgtcattgcaatca
gaaattaccaatctctccaaagcgaatgaattggaaaggaactgccctatctcctccccagaaa
tatgaact
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTAAACTGGATTATGTCATTGCAATCAGAAATTACCAATCTCTCCAAAGCGAATGAATTGGAA
AGGAACTGCCCTATCTCCTCCCCAGAAATATGAACTTCATATAAATGTAAGCTTGTCAAGCTTA
TGTTGCAACCTAGAGCCACTGTAGGATGAAAAGAACAAGAGGAGAGGAAAAGTGACTGAATTGT
CCCTCCACCTGCCTTACTTGATAGAATGGAACATGGGAAGTTGTATTCTGTCCTTTTTTTGCAT
AAAGACATCTCCAAGGAGAGTTCTTTGATCCCAGCTTTGATAACATGTACAAACCATTTGTCAA
GAACAGCTGCATCTATGTTCGGACAGGCAAACAGTTGAAGTTTAAACACTTTGACCCCAATGCC
AGAGTGGTTATTAATAATATGGTCAATTTTACTGATGGCATAGCTTTCCATGTCATCCACTTTA
AGCGCTGGCTCATACAATGGCACATCTTCCGCATACAAACTAAGTTTTCTCTTAGCCAAACCTA
TTGTTTTGCTATTTAATACAAGGATTGGATAGCGTCTCCAGCAACGTAGAAATCCATGCGACAC
ACAAGCAGCACGAGCGGCATCTTTCAATGGCATTAGAGAATATACATGATGCAAGATATCCTGG
AAAAAAACATGTTTGAATAATTCAGCATTCAGAGAGTACTAGCAATGCACACTTCACTTAGAAC
AAACAGAAGGACCAGCTGCTTAGTAAAATATACTTAAATTGTTACTAGTGGACAGTGGCCAACA
GGTCAAGTGCTTTTTCTTAAATTTCCCTATATGCGGTACCAAAAGACTTATAAGTGGATATACA
TTTTTCTCATTGGGACATTTAACCAAACTTCATAACACACGGTACTCCTTAGTCCTTATATGTC
ATCAATCCACAAAAAATAGCATCACAGGTCATCTTCATGATAGGTAAAGCTCATATCGGGAGAT
AACAAATTAGCTAATGCTACAGAAGTAATCTGGTAATAGTTAATTGTTCTGCTAGTAGTTTTGA
AAAGACCACAACAATGATAATTTTGGAGCATGGAGTAGTAGACAATGTGCAGAGAAAGCCAAAC
ATTAAAAAGTAACAGTGCATTCGAATTCAATTTATGCACAACATTCTGAAACCTCATTGAGATA
GTTTGCTAAAACATTGTTGTTTAACACCGATTCCTACAATCTACCCCTTGAGAAAAAAAATATT
ACAATCCAAGCACACCAAAACATAGCAGTTTCAATGATACTGTAGTAGTTAACAGACTATGACA
TTATTAGCAATCCATACCTCCGGAAGTTTATCGAGCGGGAGTTCTGGCATTATGCCCGCATAAA
TATCATCTTGCTGCCGTGGAGCGTAAATTATCTTTGAAGATGTGTCCAATTTGTCTAGAGATAG
AGATAGAAACAAAAGGTTAGAGAATGAATTTGCTAATGCAATTCAAGGCTTACAGACAAGAACC
ACTAATTTGCATAAACCAAAATAAGGTGAAGATTTGAGCACTAGACCAGATAAGAGTTAAAAAT
TCCCCTGTCTAAATTGCACTTTATTATAAGCTAGCTGAAGAACCAATCAGGTTAAGGAGGAGCC
TAAGAGCAGTTTTTCTTCTAAAACATAATCCCTCCGTATTTTTTAATGTATGACGCTGTTAACT
TTTTGACCAACGTTTGACCATTCGTTTTATTCAAAATTTTTGTACAAATATAAAAATATTTATG
TCATGCTTAAAGAACATTTGATGATGAATCAAGTCACAATAAAATAAATAATAATTACATAATT
TTTTTAAATAAGACGAATGGTCAAACGTTGGATAAAAAGTCAACTGCGTCATACATTAAAATAT
TAAAATATGGAGGTAGTAATAAGTATGCAATAAACGATAGCGGTAGAATCCAACGACGATCTCT
GTATAGGAAGGTGGATCGAAAGCTGAGGGGGCGGGGGAAGCATATACTTGTTTGAAGCTCACGG
AGGAGCTGCATCGTCCTGCACTCGGTGGCACGGGTCTCCATGGCTCCGCCCGGCCGCTTCCGAT
TCCCCCTTGCAGTCTACATACTCCAGACGCCAGCCAGGAAAGGCGATCCGGACGTCGCCGGCGC
GCGAGATTACCTCAAACGGCGGCGAATCCGGCCGCCTCTTGTACTGCTGAGAATGAAAATCCCG
GGGGGCGCTCCACACGGCGGCAACCGAGATCGGCGGCGCTGCCTGCCTGCCTGCCTCGAGAGCC
GTCGGCGGCGGAGCTCGTGTGGGAACTCGAGAGGGCGCGGGCGCGGGCCGGGGTGGACTGTGGA
GCTCCCCGGCGCTACATGCGGCGCAGTCCACCGCAGTGGAGCGTGGAGAACCGCGGCGATGGGA
AGGGGATGATGAAGGAAGTTGGTGAGGACACCTCAGACTCACAGTTCGATGGCTACTTTCTCAG
TTACTCCCCCGTTTCAAAACGTAAGTCATTTATTTTTCATATTTATAGTAATACTAATAAATCT
AAATAAAATTAATATTTTTTTATCTAGATTAATTAGTATCAATATAAATATGGAAAATGCTAGA
ATGGCTTACATTGTGAAACAGAGAAAGTACATTTGTTACAAAATAAATTTATTTTTATTTTCTT
TACTTAATGTTTGGTTCTTCGTTTTATTTGAAAATTTTATTAAAAAAATAGTTACAGAAGTATT
TATATGTTATCATCCAATAAAAATAAAATAATAATAATATTTTAGAACGAAAGTAATAATAGAA
TAAAAGAATGAAATAACATCACAATTCTCGACTACCAAAATAACTTTGAATACTTATTGGACGA
GTTTAAACTTTACTTTCAAACTATAACTTTCTTGTTTTAAAGTTTCCAACAGCACATTTTCAAA
CCGTTATATAATATGTTCTGTGCAAAAATTTTCTATTTAAAATCTATGATATAACCAGAATGCA
ATGTGGGCCTTGCTTTTCAATGGGCTCTCTATTCGGCCCAGTAACTCACTCGTCAGAGACGAAC
TCAGCGATACGACGGTCGACGGCCATGGCTTTGTCGAAGCTTTGCGATTGCAACCAGCGATGAG
CGATGGCAGCTACTCTGTAATCTGTATGACCTTTAGTCACTAATTTCATTTCTTTTATGTTATA
CTAATAAAACCAGATAAAGCTACTGCTTTTGACACTAAACTAAAAACAATTCTAGCACAAAAAT
ATTGCTCTTGGCTTCTGAATGCAAGAATGTCCCCCAAAATACCATACTTGTTCTTTACTTGGTT
GTGCTGTACTGCTGTGCATTTTTACATTTCTACATTCGATTTTTCTTTTTTGCGAACAAGCAAA
AAGGATTGAGCGTCAATATAGATTTCTACACTTGAATTTCTCCTCTGAAGAAACGCTATCTGGA
CTTCTTGAGATGTATTGTGTCAGTACCCAAAATGACAATGCCTGCAGGGTTCCAGAAACTTATA
CTCGACAAAGGAGGGTATTTTCCCCGCGATGTGTCTTCTGGCTGCCTCGAAAGCTCTTCGTGCT
TCCAAGATCCCTCCTCTCATCATAGGAGAGCATTCGCCCATCGCCAAATGGTTCTTGCCAGAGA
AGTTGGCTGTATCCAGCGTAATGCACTTGAGCGATGGTGCATTCTCAAGAATGTGAGTTGTTAG
CTCAATCATGCTCTTTGTAGAATTGAAGCCGGTGATCGTCACATTCTGGAGGTTGGCATGTCCG
TCGTGCAGAATTCGCCTCAAATCCGTAGGTTCTCCATCAAGAATCGAATCATGCCTTTCGAACT
GCTGCTCTACCTGCATAGGAATAGTAGTAGTTACTCATTAAAACTTGGTCACATACTCCTCATC
AAGTACAGTCACTAATAATGATTATAGAAGCTTAAAATATTTTATCATGAGAAAAGCCCAAACT
GAATTGCTGCTGTTGGCTTGTGAAGCACCACAGATGTTCTCTATTTGGTTGTCTTACTAGTGCG
TATTTAAGTACTAAACTATTTCTACTATCTATTATATATTGTGAGAAACTATATTAAAAATATC
TACAACGAACTATACCGAATTAATTATCCTGCCAAATTTGCTAAGAGTAGAAGCCCCCAAAGGC
CCAAACTGCAAGCATTAACTGAACTTTTATGATTTGCGGTATGCAACATTGAGAAAGTGGCATA
CGTGCAAGATGAAAGTCTCCAAGGCAGGGGAAGCATCCAAGAAAGAAACCAGAGAAAAGAAATC
ATAGCTGGGAAGTGAGGCAAATAATTCTTTAAGATAAATCTCCAAGAACTTGAGGTGGAGGAAC
TTGCTGGGCACCACTGGCGTACTGGTCATCTGAAAGAGAAGAAGAAGAGATGCCTCAGGAATTT
TAGTCGTGTTTCATGTGCACGTGTGACATGCATATCACCAGCATGTAATTAATTGTAGTTATAA
AGCAACTGGATGGCACAAAGAAAACAATAATGCATACCTCATTAGGAGATGACACGACAAGTGA
TTCAATATTTGGCAAAATGGATGGAAGCTTGGTACGAGCATAACAGACGGTGTCGGCTTCATTG
TAACCCATCAGACGTATGTCCTTGACCTGCAGTGGATCTCCAAGAGAGATTTTAACTCCAACAT
CCCCATAGATAAAAGTGGAGAGTTTGGGAGCATCTATCTCTATCACTTGTAGCATTTGACATTT
TGTAACCTCGAGGTACTTGAGCTGTTGCATCAGGCAAGGTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.658515453
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017