Detail information of Os04g0626600_circ_ag.1


General Information
CircRNA Name Os04g0626600_circ_ag.1
ID in PlantcircBase osa_circ_025414
Alias NA
Organism Oryza sativa
Position chr4: 31877281-31881994  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method circRNA_finder
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os04g0626600_circ_ag.2 Os04g0626600_circ_ag.3 Os04g0626600_circ_ag.4
Support reads 5
Tissues seed
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGAGATTTTAACTCCAACATCCCCATAGATAAAAGTGGAGAGTTTGGGAGCATCTATCTCTAT
CACTTGTAGCATTTGACATTTTGTAACCTCGAGGTAtttgagctgctgcatcaggcaaggtacc
ttaaactggattatgtcattgcaatcagaaattaccaatctctccaaagcgaatgaattggaaa
ggaactgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTTGAGCTGCTGCATCAGGCAAGGTACCTTAAACTGGATTATGTCATTGCAATCAGAAATTACC
AATCTCTCCAAAGCGAATGAATTGGAAAGGAACTGCCCTATCTCCTCCCCAGAAATATGAACTT
CATATAAATGTAAGCTTGTCAAGCTTATGTTGCAACCTAGAGCCACTGTAGGATGAAAAGAACA
AGAGGAGAGGAAAAGTGACTGAATTGTCCCTCCACCTGCCTTACTTGATAGAATGGAACATGGG
AAGTTGTATTCTGTCCTTTTTTTGCATAAAGACATCTCCAAGGAGAGTTCTTTGATCCCAGCTT
TGATAACATGTACAAACCATTTGTCAAGAACAGCTGCATCTATGTTCGGACAGGCAAACAGTTG
AAGTTTAAACACTTTGACCCCAATGCCAGAGTGGTTATTAATAATATGGTCAATTTTACTGATG
GCATAGCTTTCCATGTCATCCACTTTAAGCGCTGGCTCATACAATGGCACATCTTCCGCATACA
AACTAAGTTTTCTCTTAGCCAAACCTATTGTTTTGCTATTTAATACAAGGATTGGATAGCGTCT
CCAGCAACGTAGAAATCCATGCGACACACAAGCAGCACGAGCGGCATCTTTCAATGGCATTAGA
GAATATACATGATGCAAGATATCCTGGAAAAAAACATGTTTGAATAATTCAGCATTCAGAGAGT
ACTAGCAATGCACACTTCACTTAGAACAAACAGAAGGACCAGCTGCTTAGTAAAATATACTTAA
ATTGTTACTAGTGGACAGTGGCCAACAGGTCAAGTGCTTTTTCTTAAATTTCCCTATATGCGGT
ACCAAAAGACTTATAAGTGGATATACATTTTTCTCATTGGGACATTTAACCAAACTTCATAACA
CACGGTACTCCTTAGTCCTTATATGTCATCAATCCACAAAAAATAGCATCACAGGTCATCTTCA
TGATAGGTAAAGCTCATATCGGGAGATAACAAATTAGCTAATGCTACAGAAGTAATCTGGTAAT
AGTTAATTGTTCTGCTAGTAGTTTTGAAAAGACCACAACAATGATAATTTTGGAGCATGGAGTA
GTAGACAATGTGCAGAGAAAGCCAAACATTAAAAAGTAACAGTGCATTCGAATTCAATTTATGC
ACAACATTCTGAAACCTCATTGAGATAGTTTGCTAAAACATTGTTGTTTAACACCGATTCCTAC
AATCTACCCCTTGAGAAAAAAAATATTACAATCCAAGCACACCAAAACATAGCAGTTTCAATGA
TACTGTAGTAGTTAACAGACTATGACATTATTAGCAATCCATACCTCCGGAAGTTTATCGAGCG
GGAGTTCTGGCATTATGCCCGCATAAATATCATCTTGCTGCCGTGGAGCGTAAATTATCTTTGA
AGATGTGTCCAATTTGTCTAGAGATAGAGATAGAAACAAAAGGTTAGAGAATGAATTTGCTAAT
GCAATTCAAGGCTTACAGACAAGAACCACTAATTTGCATAAACCAAAATAAGGTGAAGATTTGA
GCACTAGACCAGATAAGAGTTAAAAATTCCCCTGTCTAAATTGCACTTTATTATAAGCTAGCTG
AAGAACCAATCAGGTTAAGGAGGAGCCTAAGAGCAGTTTTTCTTCTAAAACATAATCCCTCCGT
ATTTTTTAATGTATGACGCTGTTAACTTTTTGACCAACGTTTGACCATTCGTTTTATTCAAAAT
TTTTGTACAAATATAAAAATATTTATGTCATGCTTAAAGAACATTTGATGATGAATCAAGTCAC
AATAAAATAAATAATAATTACATAATTTTTTTAAATAAGACGAATGGTCAAACGTTGGATAAAA
AGTCAACTGCGTCATACATTAAAATATTAAAATATGGAGGTAGTAATAAGTATGCAATAAACGA
TAGCGGTAGAATCCAACGACGATCTCTGTATAGGAAGGTGGATCGAAAGCTGAGGGGGCGGGGG
AAGCATATACTTGTTTGAAGCTCACGGAGGAGCTGCATCGTCCTGCACTCGGTGGCACGGGTCT
CCATGGCTCCGCCCGGCCGCTTCCGATTCCCCCTTGCAGTCTACATACTCCAGACGCCAGCCAG
GAAAGGCGATCCGGACGTCGCCGGCGCGCGAGATTACCTCAAACGGCGGCGAATCCGGCCGCCT
CTTGTACTGCTGAGAATGAAAATCCCGGGGGGCGCTCCACACGGCGGCAACCGAGATCGGCGGC
GCTGCCTGCCTGCCTGCCTCGAGAGCCGTCGGCGGCGGAGCTCGTGTGGGAACTCGAGAGGGCG
CGGGCGCGGGCCGGGGTGGACTGTGGAGCTCCCCGGCGCTACATGCGGCGCAGTCCACCGCAGT
GGAGCGTGGAGAACCGCGGCGATGGGAAGGGGATGATGAAGGAAGTTGGTGAGGACACCTCAGA
CTCACAGTTCGATGGCTACTTTCTCAGTTACTCCCCCGTTTCAAAACGTAAGTCATTTATTTTT
CATATTTATAGTAATACTAATAAATCTAAATAAAATTAATATTTTTTTATCTAGATTAATTAGT
ATCAATATAAATATGGAAAATGCTAGAATGGCTTACATTGTGAAACAGAGAAAGTACATTTGTT
ACAAAATAAATTTATTTTTATTTTCTTTACTTAATGTTTGGTTCTTCGTTTTATTTGAAAATTT
TATTAAAAAAATAGTTACAGAAGTATTTATATGTTATCATCCAATAAAAATAAAATAATAATAA
TATTTTAGAACGAAAGTAATAATAGAATAAAAGAATGAAATAACATCACAATTCTCGACTACCA
AAATAACTTTGAATACTTATTGGACGAGTTTAAACTTTACTTTCAAACTATAACTTTCTTGTTT
TAAAGTTTCCAACAGCACATTTTCAAACCGTTATATAATATGTTCTGTGCAAAAATTTTCTATT
TAAAATCTATGATATAACCAGAATGCAATGTGGGCCTTGCTTTTCAATGGGCTCTCTATTCGGC
CCAGTAACTCACTCGTCAGAGACGAACTCAGCGATACGACGGTCGACGGCCATGGCTTTGTCGA
AGCTTTGCGATTGCAACCAGCGATGAGCGATGGCAGCTACTCTGTAATCTGTATGACCTTTAGT
CACTAATTTCATTTCTTTTATGTTATACTAATAAAACCAGATAAAGCTACTGCTTTTGACACTA
AACTAAAAACAATTCTAGCACAAAAATATTGCTCTTGGCTTCTGAATGCAAGAATGTCCCCCAA
AATACCATACTTGTTCTTTACTTGGTTGTGCTGTACTGCTGTGCATTTTTACATTTCTACATTC
GATTTTTCTTTTTTGCGAACAAGCAAAAAGGATTGAGCGTCAATATAGATTTCTACACTTGAAT
TTCTCCTCTGAAGAAACGCTATCTGGACTTCTTGAGATGTATTGTGTCAGTACCCAAAATGACA
ATGCCTGCAGGGTTCCAGAAACTTATACTCGACAAAGGAGGGTATTTTCCCCGCGATGTGTCTT
CTGGCTGCCTCGAAAGCTCTTCGTGCTTCCAAGATCCCTCCTCTCATCATAGGAGAGCATTCGC
CCATCGCCAAATGGTTCTTGCCAGAGAAGTTGGCTGTATCCAGCGTAATGCACTTGAGCGATGG
TGCATTCTCAAGAATGTGAGTTGTTAGCTCAATCATGCTCTTTGTAGAATTGAAGCCGGTGATC
GTCACATTCTGGAGGTTGGCATGTCCGTCGTGCAGAATTCGCCTCAAATCCGTAGGTTCTCCAT
CAAGAATCGAATCATGCCTTTCGAACTGCTGCTCTACCTGCATAGGAATAGTAGTAGTTACTCA
TTAAAACTTGGTCACATACTCCTCATCAAGTACAGTCACTAATAATGATTATAGAAGCTTAAAA
TATTTTATCATGAGAAAAGCCCAAACTGAATTGCTGCTGTTGGCTTGTGAAGCACCACAGATGT
TCTCTATTTGGTTGTCTTACTAGTGCGTATTTAAGTACTAAACTATTTCTACTATCTATTATAT
ATTGTGAGAAACTATATTAAAAATATCTACAACGAACTATACCGAATTAATTATCCTGCCAAAT
TTGCTAAGAGTAGAAGCCCCCAAAGGCCCAAACTGCAAGCATTAACTGAACTTTTATGATTTGC
GGTATGCAACATTGAGAAAGTGGCATACGTGCAAGATGAAAGTCTCCAAGGCAGGGGAAGCATC
CAAGAAAGAAACCAGAGAAAAGAAATCATAGCTGGGAAGTGAGGCAAATAATTCTTTAAGATAA
ATCTCCAAGAACTTGAGGTGGAGGAACTTGCTGGGCACCACTGGCGTACTGGTCATCTGAAAGA
GAAGAAGAAGAGATGCCTCAGGAATTTTAGTCGTGTTTCATGTGCACGTGTGACATGCATATCA
CCAGCATGTAATTAATTGTAGTTATAAAGCAACTGGATGGCACAAAGAAAACAATAATGCATAC
CTCATTAGGAGATGACACGACAAGTGATTCAATATTTGGCAAAATGGATGGAAGCTTGGTACGA
GCATAACAGACGGTGTCGGCTTCATTGTAACCCATCAGACGTATGTCCTTGACCTGCAGTGGAT
CTCCAAGAGAGATTTTAACTCCAACATCCCCATAGATAAAAGTGGAGAGTTTGGGAGCATCTAT
CTCTATCACTTGTAGCATTTGACATTTTGTAACCTCGAGGTA
Conservation Information
Conserved circRNAs NA
PMCS 0.334304927
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017