Detail information of Os04g0626600_circ_ag.2


General Information
CircRNA Name Os04g0626600_circ_ag.2
ID in PlantcircBase osa_circ_025415
Alias NA
Organism Oryza sativa
Position chr4: 31877304-31882017  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method circRNA_finder
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os04g0626600_circ_ag.1 Os04g0626600_circ_ag.3 Os04g0626600_circ_ag.4
Support reads 8
Tissues seed, pistil
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCATAGATAAAAGTGGAGAGTTTGGGAGCATCTATCTCTATCACTTGTAGCATTTGACATTTTG
TAACCTCGAGGTACTTGAGCTGTTGCATCAGGCAAGgtaccttaaactggattatgtcattgca
atcagaaattaccaatctctccaaagcgaatgaattggaaaggaactgccctatctcctcccca
gaaatatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTACCTTAAACTGGATTATGTCATTGCAATCAGAAATTACCAATCTCTCCAAAGCGAATGAATT
GGAAAGGAACTGCCCTATCTCCTCCCCAGAAATATGAACTTCATATAAATGTAAGCTTGTCAAG
CTTATGTTGCAACCTAGAGCCACTGTAGGATGAAAAGAACAAGAGGAGAGGAAAAGTGACTGAA
TTGTCCCTCCACCTGCCTTACTTGATAGAATGGAACATGGGAAGTTGTATTCTGTCCTTTTTTT
GCATAAAGACATCTCCAAGGAGAGTTCTTTGATCCCAGCTTTGATAACATGTACAAACCATTTG
TCAAGAACAGCTGCATCTATGTTCGGACAGGCAAACAGTTGAAGTTTAAACACTTTGACCCCAA
TGCCAGAGTGGTTATTAATAATATGGTCAATTTTACTGATGGCATAGCTTTCCATGTCATCCAC
TTTAAGCGCTGGCTCATACAATGGCACATCTTCCGCATACAAACTAAGTTTTCTCTTAGCCAAA
CCTATTGTTTTGCTATTTAATACAAGGATTGGATAGCGTCTCCAGCAACGTAGAAATCCATGCG
ACACACAAGCAGCACGAGCGGCATCTTTCAATGGCATTAGAGAATATACATGATGCAAGATATC
CTGGAAAAAAACATGTTTGAATAATTCAGCATTCAGAGAGTACTAGCAATGCACACTTCACTTA
GAACAAACAGAAGGACCAGCTGCTTAGTAAAATATACTTAAATTGTTACTAGTGGACAGTGGCC
AACAGGTCAAGTGCTTTTTCTTAAATTTCCCTATATGCGGTACCAAAAGACTTATAAGTGGATA
TACATTTTTCTCATTGGGACATTTAACCAAACTTCATAACACACGGTACTCCTTAGTCCTTATA
TGTCATCAATCCACAAAAAATAGCATCACAGGTCATCTTCATGATAGGTAAAGCTCATATCGGG
AGATAACAAATTAGCTAATGCTACAGAAGTAATCTGGTAATAGTTAATTGTTCTGCTAGTAGTT
TTGAAAAGACCACAACAATGATAATTTTGGAGCATGGAGTAGTAGACAATGTGCAGAGAAAGCC
AAACATTAAAAAGTAACAGTGCATTCGAATTCAATTTATGCACAACATTCTGAAACCTCATTGA
GATAGTTTGCTAAAACATTGTTGTTTAACACCGATTCCTACAATCTACCCCTTGAGAAAAAAAA
TATTACAATCCAAGCACACCAAAACATAGCAGTTTCAATGATACTGTAGTAGTTAACAGACTAT
GACATTATTAGCAATCCATACCTCCGGAAGTTTATCGAGCGGGAGTTCTGGCATTATGCCCGCA
TAAATATCATCTTGCTGCCGTGGAGCGTAAATTATCTTTGAAGATGTGTCCAATTTGTCTAGAG
ATAGAGATAGAAACAAAAGGTTAGAGAATGAATTTGCTAATGCAATTCAAGGCTTACAGACAAG
AACCACTAATTTGCATAAACCAAAATAAGGTGAAGATTTGAGCACTAGACCAGATAAGAGTTAA
AAATTCCCCTGTCTAAATTGCACTTTATTATAAGCTAGCTGAAGAACCAATCAGGTTAAGGAGG
AGCCTAAGAGCAGTTTTTCTTCTAAAACATAATCCCTCCGTATTTTTTAATGTATGACGCTGTT
AACTTTTTGACCAACGTTTGACCATTCGTTTTATTCAAAATTTTTGTACAAATATAAAAATATT
TATGTCATGCTTAAAGAACATTTGATGATGAATCAAGTCACAATAAAATAAATAATAATTACAT
AATTTTTTTAAATAAGACGAATGGTCAAACGTTGGATAAAAAGTCAACTGCGTCATACATTAAA
ATATTAAAATATGGAGGTAGTAATAAGTATGCAATAAACGATAGCGGTAGAATCCAACGACGAT
CTCTGTATAGGAAGGTGGATCGAAAGCTGAGGGGGCGGGGGAAGCATATACTTGTTTGAAGCTC
ACGGAGGAGCTGCATCGTCCTGCACTCGGTGGCACGGGTCTCCATGGCTCCGCCCGGCCGCTTC
CGATTCCCCCTTGCAGTCTACATACTCCAGACGCCAGCCAGGAAAGGCGATCCGGACGTCGCCG
GCGCGCGAGATTACCTCAAACGGCGGCGAATCCGGCCGCCTCTTGTACTGCTGAGAATGAAAAT
CCCGGGGGGCGCTCCACACGGCGGCAACCGAGATCGGCGGCGCTGCCTGCCTGCCTGCCTCGAG
AGCCGTCGGCGGCGGAGCTCGTGTGGGAACTCGAGAGGGCGCGGGCGCGGGCCGGGGTGGACTG
TGGAGCTCCCCGGCGCTACATGCGGCGCAGTCCACCGCAGTGGAGCGTGGAGAACCGCGGCGAT
GGGAAGGGGATGATGAAGGAAGTTGGTGAGGACACCTCAGACTCACAGTTCGATGGCTACTTTC
TCAGTTACTCCCCCGTTTCAAAACGTAAGTCATTTATTTTTCATATTTATAGTAATACTAATAA
ATCTAAATAAAATTAATATTTTTTTATCTAGATTAATTAGTATCAATATAAATATGGAAAATGC
TAGAATGGCTTACATTGTGAAACAGAGAAAGTACATTTGTTACAAAATAAATTTATTTTTATTT
TCTTTACTTAATGTTTGGTTCTTCGTTTTATTTGAAAATTTTATTAAAAAAATAGTTACAGAAG
TATTTATATGTTATCATCCAATAAAAATAAAATAATAATAATATTTTAGAACGAAAGTAATAAT
AGAATAAAAGAATGAAATAACATCACAATTCTCGACTACCAAAATAACTTTGAATACTTATTGG
ACGAGTTTAAACTTTACTTTCAAACTATAACTTTCTTGTTTTAAAGTTTCCAACAGCACATTTT
CAAACCGTTATATAATATGTTCTGTGCAAAAATTTTCTATTTAAAATCTATGATATAACCAGAA
TGCAATGTGGGCCTTGCTTTTCAATGGGCTCTCTATTCGGCCCAGTAACTCACTCGTCAGAGAC
GAACTCAGCGATACGACGGTCGACGGCCATGGCTTTGTCGAAGCTTTGCGATTGCAACCAGCGA
TGAGCGATGGCAGCTACTCTGTAATCTGTATGACCTTTAGTCACTAATTTCATTTCTTTTATGT
TATACTAATAAAACCAGATAAAGCTACTGCTTTTGACACTAAACTAAAAACAATTCTAGCACAA
AAATATTGCTCTTGGCTTCTGAATGCAAGAATGTCCCCCAAAATACCATACTTGTTCTTTACTT
GGTTGTGCTGTACTGCTGTGCATTTTTACATTTCTACATTCGATTTTTCTTTTTTGCGAACAAG
CAAAAAGGATTGAGCGTCAATATAGATTTCTACACTTGAATTTCTCCTCTGAAGAAACGCTATC
TGGACTTCTTGAGATGTATTGTGTCAGTACCCAAAATGACAATGCCTGCAGGGTTCCAGAAACT
TATACTCGACAAAGGAGGGTATTTTCCCCGCGATGTGTCTTCTGGCTGCCTCGAAAGCTCTTCG
TGCTTCCAAGATCCCTCCTCTCATCATAGGAGAGCATTCGCCCATCGCCAAATGGTTCTTGCCA
GAGAAGTTGGCTGTATCCAGCGTAATGCACTTGAGCGATGGTGCATTCTCAAGAATGTGAGTTG
TTAGCTCAATCATGCTCTTTGTAGAATTGAAGCCGGTGATCGTCACATTCTGGAGGTTGGCATG
TCCGTCGTGCAGAATTCGCCTCAAATCCGTAGGTTCTCCATCAAGAATCGAATCATGCCTTTCG
AACTGCTGCTCTACCTGCATAGGAATAGTAGTAGTTACTCATTAAAACTTGGTCACATACTCCT
CATCAAGTACAGTCACTAATAATGATTATAGAAGCTTAAAATATTTTATCATGAGAAAAGCCCA
AACTGAATTGCTGCTGTTGGCTTGTGAAGCACCACAGATGTTCTCTATTTGGTTGTCTTACTAG
TGCGTATTTAAGTACTAAACTATTTCTACTATCTATTATATATTGTGAGAAACTATATTAAAAA
TATCTACAACGAACTATACCGAATTAATTATCCTGCCAAATTTGCTAAGAGTAGAAGCCCCCAA
AGGCCCAAACTGCAAGCATTAACTGAACTTTTATGATTTGCGGTATGCAACATTGAGAAAGTGG
CATACGTGCAAGATGAAAGTCTCCAAGGCAGGGGAAGCATCCAAGAAAGAAACCAGAGAAAAGA
AATCATAGCTGGGAAGTGAGGCAAATAATTCTTTAAGATAAATCTCCAAGAACTTGAGGTGGAG
GAACTTGCTGGGCACCACTGGCGTACTGGTCATCTGAAAGAGAAGAAGAAGAGATGCCTCAGGA
ATTTTAGTCGTGTTTCATGTGCACGTGTGACATGCATATCACCAGCATGTAATTAATTGTAGTT
ATAAAGCAACTGGATGGCACAAAGAAAACAATAATGCATACCTCATTAGGAGATGACACGACAA
GTGATTCAATATTTGGCAAAATGGATGGAAGCTTGGTACGAGCATAACAGACGGTGTCGGCTTC
ATTGTAACCCATCAGACGTATGTCCTTGACCTGCAGTGGATCTCCAAGAGAGATTTTAACTCCA
ACATCCCCATAGATAAAAGTGGAGAGTTTGGGAGCATCTATCTCTATCACTTGTAGCATTTGAC
ATTTTGTAACCTCGAGGTACTTGAGCTGTTGCATCAGGCAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.36763826
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017