Detail information of BGIOSGA011665_circ_ig.15


General Information
CircRNA Name BGIOSGA011665_circ_ig.15
ID in PlantcircBase osi_circ_014010
Alias Chr03:282889_289982(ZS97RS2), Chr03:282889_300448(ZS97RS2), Chr03:282889_300634(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr3: 549433-553895  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRI2, find_circ, CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA011665_circ_ig.4 BGIOSGA011665_circ_ig.5 BGIOSGA011665_circ_ig.6 BGIOSGA011665_circ_ig.7 BGIOSGA011665_circ_ig.8 BGIOSGA011665_circ_ig.9 BGIOSGA011665_circ_ig.10 BGIOSGA011665_circ_ig.11 BGIOSGA011665_circ_ig.12 BGIOSGA011665_circ_ig.13 BGIOSGA011665_circ_ig.14
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   TG-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTTATTCCATAGTTTGCTCCACTGTTATGCCAATGACTATATTCCGTCGTTCAGGAACTAACA
TTTCATTTTCTTCAGGCATGCGGGAGATGTAATGTTgagcttgtttggttgctgcgctggcctg
ggggctgtcgctcaggcatgtcgatccagccgtaggcgtacaaaatcggacgcctgagagttgc
gcctgagt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAGCTTGTTTGGTTGCTGCGCTGGCCTGGGGGCTGTCGCTCAGGCATGTCGATCCAGCCGTAGG
CGTACAAAATCGGACGCCTGAGAGTTGCGCCTGAGTCAGGCGAGTTTTCCAGGACACGAAGCAA
ACAGGCTCTCAGTGACAAGGAAGCTGAAATCAGATGGCAATTAATGTGGATACGATACTTGCGC
ACAATCTTAACGAAGGTATGTTTAATGCTTTCTTTTAGCTTTGGGTACATCTTGATTGCATTTT
GGATGTTTTTTTATTGAGTAAATTGCAGATTGGTCCTGTTTTTATTACCAAAGTGTCACTTTGG
GCCACCTCCAATTCAATCTTTCACTTAAAGCCAGCTATTATTACCAATCCTTTGCAATTTGGGC
TAGTGGCCCACCTGTCAGTAGGCGGTGGAGGAGGAAGAGGAGCACGGCACGGCGATGGCGCCCG
TGCCCCTAGATTGGCAAAGCAGCGGCGACGATGGCTCCAGCTCCGTGCAGCGGCGCCATCACCA
CCATGGGCGGCCTGAGCACCGACGCCCTATCCCTCTCCTTCTCTACTGTTGCTCGACCTGGAGA
AGAAGAAACAGAAAGAGAGAAGGAAGAAGGAAGAAAGAGAAACAGAAAAGAGGACAGCAGCAGA
GGAGTTCGCAAGCCTTCTGACAGGTGGGCCACTAGCCCAAATTGCAAAGGATTGGTAACAATAG
CTGGCTTTAAGTGAAAAGATTGAATTGGAGGTAGCCCAAAGTGACACTTTGGTAATAAAAGCTG
GACCAATCTGCAATTTACTCTTTTTTATTCTATTAGTGGGTTCAAGGGAATAATATAAGGCAAA
TTACTTCCTTTTCAAAATCTAGGATACCGTTGACTTTTCGTACTAACATTTGACCGTTCGTCTT
ATTCAAAAATTTAATATAAATATGTAATTGTATAAGCTAAGATTATATTGTAGAAATTTAATAT
AATTAAATGATATAAGGCAAATGGTCAAACATTATGCTAAAAATCAATGACGTCATACATTTTG
AAATGGAGGGAGTACTTGATTTTTGTTCTTGTGAGATGAGGTTGCAAGTCTCCTCTGTAATGAT
GTATAAACTTGCCTGCCCAAAAATAATAATAATAAAAATCTGGCCCAACTGTTGTTAGGTTTAT
TTTGTGACAGAAAATTTCGTGGTAGTAAAAATTCCAGAAAGTAATAGTAGTATATATAGTAGTA
AATAATAACAAAGAAGGATTTTTTTTTGTCCATGTGGAGCATACTGGGCCCATGGATCTATTTA
GTTGGGGATGTGGGCCGAATAAGCTGTTTCGTGGGCCTGCGGATCTGCTAACTCGAGCTGCTAG
GTCTCCATCAGTACCCTGTGCTTGCCTCCTCCATACCCTCGCCTCGACCTCGAGAAGGGGGGGC
GGCGGCTGCTGCTCGCGCTCGGCTACTCCGGCCAAGGACGTCAACCTCAGCCGGCCCCGACGCC
TGCCCCCTTGCCCCAACTTCCCCGCGTTAAGGTAAATTGCATTCCCTCGTCACTTCACTTGGAT
CATTTCCGTGTTCGCGGTGGCTCTAAGGCCCGCTTTTTTTTTATCATCTCAGATCAAGAACCGA
GGGTTTCTCACTGCAAAGGCTTGGTTTTTGCCTGAGAGGAGATGTCTAGGAAGAGAGCTTTCTG
CACGGCAGTGGAGACTGGCAGAAAAACTCCAGAGTTTTGCTATCTTCTGTATGTTCAGCTATCT
CAGAACCTTTTATTTAATTCATATTTTGTAGGATTAGACCTGGTCTATCTCCTGTCCTTGAATT
GTTTTTAAAGATTATTACAAGTATGGATTGAGAATGAGGAAAAATAAAAAGAACTACATGATTT
CTTTATGATGATGTACCTAAGCCTGCTGATGGACTGGGTTTAAGTGGATATAGTGGGTTGGATT
TCAGTGTGGGTTAGCTTTGGGCGGGTGGAAATGGGTTGCTGCACCTGATGGATTGGACTGGTTT
GGATGGAGATGGGAAATGGTTTAGATTGGTTTAGTTTTGGCTGCAAAAGTTTGGTCCCAGATTG
GATTCAACCGATGGGTATCCACTGGATTGGCCCCAATCCCATCGTCTCCCTGAGAAGTCGACAA
CCACACCGCCGCCATCGCTAGCTCAACTTCGTCGCAGGTGGCTTGCTACCTTCCTCTCCCTCCT
CCGGCAAACCTTCTCCCTTCACAAAGTTCCCAAAAAATCAACCATGGCTCCGGATCTTCTGGCT
GCCCGCAGCAACAGCGGCGGCATCGAAGGCCGTGGCCGTGGCCGCCATCATGGGGGAGAAGGGC
GGGGCAACGTGGGGCTTGTGGCGGACAATGGCGGTGCGGTGGTGCGGACTTGGGGGAGAAGTCC
TACGGCGGTGCAGCCGTGGTGGTCGCGGCTGTAGTGCTCACGAGCCTCGCGACGGTGAGTCGGT
GAACGCGCTCGCGGTGGTCGCGGCATCCCAGCGCTGGTGAGGCTCCTTCGCTGCGGCGGCGACG
ACGATGTGGCGCACGGGAGCGCCAGATGCTCCCACGACCCTGTACAAGCTCTGCAAGCTGCTCA
TCCTCCATTGATGCCCTCTGCAAGCTGCTCATCCTCCCGGAGCTGACCGAAGGAGGGAGGAGGA
AGAAGATGACGATGCCTATTGGTGTTCAGAGTAATATTGTGGATTTCCTTTGGGTTGGAAATGG
GTTGAGAATGGGTTGAATCCATTTGTCTGCACTTGGTTTGGATTGGTTTGGGCTTGCTTTGTGA
GTGGATTGGATTGGTTTGGTTTCTGCAAACTATGAATTGAATTGGATTGGTTTAGAAGTGTACT
ATAGAGACAAGTGAACTGGGGCGGTTTTGGTCTGGATCTCAGTCCATTAGCAGGCTTAGATGTA
CCGAATCTAGTTCATTCCTCTTTTTAAATTGCTATCCGGCAGAAAATTTCTCAATCTGTATGTT
TAGCTATCTCAGAACTCTGGGTTCAGCCCATATTCGATAAGATTAAACCTGGTCTATCTCCTGT
TCTTGAATTATGTAAAGATTATTACAACTATGGATTGATGAGAATGAGTAAAAGAAGATCTTGA
TTTTTCTTGTGATATGAGTCTGTCAAGTCTCTGATTCCTGTGATGTATAAAATCTATTTGTTTT
CTGTTGTTGTGAATTCTCTTGTTCCTCTTTGTAGTGATTTCTTTGCCTACCCACGTTCTGTTTT
TTGCCACATCTCTTAGGTGTGTTCTGTTTTTTTTGCCACATCTCTTAGGGGCATTGGAAAAGTA
AAATCCCTAGCTGTAGCTAATTCTAGTCCATTTAATTAATTGCAGTGGTTTCAGCGGTGTTGTT
GCGCTCCCAGGCGGTAGGTTTCAACCTTTGGATGATTTTTTGTCTGAGAATCCTTTTCTGTCAC
CTATTCCATTAGGAAGGCTCTATGAAAACATTGATCCAGCAAAGCCTTATATGCTAGAGGACCC
TATTCGTCGGGCAGTATGGTCTGGATCCCTTGCACCTTATATAGCCAACAAAGTGAAAATGTCC
CTGAGCCACATCCTCACTAAGGAAAATGTGGGGGTGCATAAGGATTTTGGCTTGGTGGTGTTCA
AAGATGTGCCAAAAAAGAGAGAGGGCATATCTGATTCGAGCGAAAACTACCAACACTACAGCAG
TTTCTTGACAGAGACCATACAAAGGCTTCATGGGTCTGAGTCCCTCAATTCCCTTCCAGTGGAA
ATGGATATATACCTTAAAGATTTGACAGATCCGAATGTTAAGGAGGATGATATTGTGGACCATC
CCATAGCACTACCAGGAAGGGTATTTGGGGATGTTTCTGTTGAAGCCTATCGACTACTGCGCAA
GCAATATCCTGTAGTAAAGAATGGGAAGGAAATTTTAGCGCATCGCATTATTGAGGCTATTGGT
GTAAAATTCAAGGATGCACTGACTGTGTCTCTTGACAGTGGACTATTGCCAAAATTCTTACGTC
TGAAATGGCAGAAGATATACCCAGCTAACAAATATCCATGGATACCTAAGCCCCAATTGATTAT
CTCACAAAAAGAGGCTGGAGAAATAGTTACTGAGATTCACCGGCATGGATCTGTCCATTCGGTC
GAAGTAGGTGTTGATGCTATTGTGACTTCCAATTTCCCAGGTTTCTCTGGTGATAAGTTCACGC
GCATGGAGGTACTGGCGCTCATCCGTCGCATTTTCCCAGAATATCTCAACACGATATTTAAGGA
ATTCAAGATGGACAATCTATATGAAGATCTGCAAATTAGGGAAAGAAATCATATTCCCAGCCTG
TACAGTGCTCAGGGCGATGGTGTTTATGCTGAAGTGATTGTCAAGTTCATTGGGTTTTGAAGCT
TCGGTAAAATTCTTTATTCCATAGTTTGCTCCACTGTTATGCCAATGACTATATTCCGTCGTTC
AGGAACTAACATTTCATTTTCTTCAGGCATGCGGGAGATGTAATGTT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021