Detail information of BGIOSGA011665_circ_ig.9


General Information
CircRNA Name BGIOSGA011665_circ_ig.9
ID in PlantcircBase osi_circ_014008
Alias Chr03:282660_300448(ZS97RS2), Chr03:282660_300634(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr3: 549204-553895  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRI2, CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA011665_circ_ig.4 BGIOSGA011665_circ_ig.5 BGIOSGA011665_circ_ig.6 BGIOSGA011665_circ_ig.7 BGIOSGA011665_circ_ig.8 BGIOSGA011665_circ_ig.10 BGIOSGA011665_circ_ig.11 BGIOSGA011665_circ_ig.12 BGIOSGA011665_circ_ig.13 BGIOSGA011665_circ_ig.14 BGIOSGA011665_circ_ig.15
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   TG-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTTATTCCATAGTTTGCTCCACTGTTATGCCAATGACTATATTCCGTCGTTCAGGAACTAACA
TTTCATTTTCTTCAGGCATGCGGGAGATGTAATGTTgagatgtaagggggcaaatccaacgact
gaggaacagggtgaatggagagcagccttctcattatgtatcagcatgtgatgcaaagatatat
agtcttgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAGATGTAAGGGGGCAAATCCAACGACTGAGGAACAGGGTGAATGGAGAGCAGCCTTCTCATTA
TGTATCAGCATGTGATGCAAAGATATATAGTCTTGTTGTAAAGATCAAGATAATCAGATTATTA
ATTGGACCGTAGACAGTAGCATCAAGAACTTCCTCTTATCTAAAGCTCTAGTTAGGCCTTGTAA
CTAATTTGCTTGCACTAAAAACTTTTATGGGCATTCAGAGCTTGTTTGGTTGCTGCGCTGGCCT
GGGGGCTGTCGCTCAGGCATGTCGATCCAGCCGTAGGCGTACAAAATCGGACGCCTGAGAGTTG
CGCCTGAGTCAGGCGAGTTTTCCAGGACACGAAGCAAACAGGCTCTCAGTGACAAGGAAGCTGA
AATCAGATGGCAATTAATGTGGATACGATACTTGCGCACAATCTTAACGAAGGTATGTTTAATG
CTTTCTTTTAGCTTTGGGTACATCTTGATTGCATTTTGGATGTTTTTTTATTGAGTAAATTGCA
GATTGGTCCTGTTTTTATTACCAAAGTGTCACTTTGGGCCACCTCCAATTCAATCTTTCACTTA
AAGCCAGCTATTATTACCAATCCTTTGCAATTTGGGCTAGTGGCCCACCTGTCAGTAGGCGGTG
GAGGAGGAAGAGGAGCACGGCACGGCGATGGCGCCCGTGCCCCTAGATTGGCAAAGCAGCGGCG
ACGATGGCTCCAGCTCCGTGCAGCGGCGCCATCACCACCATGGGCGGCCTGAGCACCGACGCCC
TATCCCTCTCCTTCTCTACTGTTGCTCGACCTGGAGAAGAAGAAACAGAAAGAGAGAAGGAAGA
AGGAAGAAAGAGAAACAGAAAAGAGGACAGCAGCAGAGGAGTTCGCAAGCCTTCTGACAGGTGG
GCCACTAGCCCAAATTGCAAAGGATTGGTAACAATAGCTGGCTTTAAGTGAAAAGATTGAATTG
GAGGTAGCCCAAAGTGACACTTTGGTAATAAAAGCTGGACCAATCTGCAATTTACTCTTTTTTA
TTCTATTAGTGGGTTCAAGGGAATAATATAAGGCAAATTACTTCCTTTTCAAAATCTAGGATAC
CGTTGACTTTTCGTACTAACATTTGACCGTTCGTCTTATTCAAAAATTTAATATAAATATGTAA
TTGTATAAGCTAAGATTATATTGTAGAAATTTAATATAATTAAATGATATAAGGCAAATGGTCA
AACATTATGCTAAAAATCAATGACGTCATACATTTTGAAATGGAGGGAGTACTTGATTTTTGTT
CTTGTGAGATGAGGTTGCAAGTCTCCTCTGTAATGATGTATAAACTTGCCTGCCCAAAAATAAT
AATAATAAAAATCTGGCCCAACTGTTGTTAGGTTTATTTTGTGACAGAAAATTTCGTGGTAGTA
AAAATTCCAGAAAGTAATAGTAGTATATATAGTAGTAAATAATAACAAAGAAGGATTTTTTTTT
GTCCATGTGGAGCATACTGGGCCCATGGATCTATTTAGTTGGGGATGTGGGCCGAATAAGCTGT
TTCGTGGGCCTGCGGATCTGCTAACTCGAGCTGCTAGGTCTCCATCAGTACCCTGTGCTTGCCT
CCTCCATACCCTCGCCTCGACCTCGAGAAGGGGGGGCGGCGGCTGCTGCTCGCGCTCGGCTACT
CCGGCCAAGGACGTCAACCTCAGCCGGCCCCGACGCCTGCCCCCTTGCCCCAACTTCCCCGCGT
TAAGGTAAATTGCATTCCCTCGTCACTTCACTTGGATCATTTCCGTGTTCGCGGTGGCTCTAAG
GCCCGCTTTTTTTTTATCATCTCAGATCAAGAACCGAGGGTTTCTCACTGCAAAGGCTTGGTTT
TTGCCTGAGAGGAGATGTCTAGGAAGAGAGCTTTCTGCACGGCAGTGGAGACTGGCAGAAAAAC
TCCAGAGTTTTGCTATCTTCTGTATGTTCAGCTATCTCAGAACCTTTTATTTAATTCATATTTT
GTAGGATTAGACCTGGTCTATCTCCTGTCCTTGAATTGTTTTTAAAGATTATTACAAGTATGGA
TTGAGAATGAGGAAAAATAAAAAGAACTACATGATTTCTTTATGATGATGTACCTAAGCCTGCT
GATGGACTGGGTTTAAGTGGATATAGTGGGTTGGATTTCAGTGTGGGTTAGCTTTGGGCGGGTG
GAAATGGGTTGCTGCACCTGATGGATTGGACTGGTTTGGATGGAGATGGGAAATGGTTTAGATT
GGTTTAGTTTTGGCTGCAAAAGTTTGGTCCCAGATTGGATTCAACCGATGGGTATCCACTGGAT
TGGCCCCAATCCCATCGTCTCCCTGAGAAGTCGACAACCACACCGCCGCCATCGCTAGCTCAAC
TTCGTCGCAGGTGGCTTGCTACCTTCCTCTCCCTCCTCCGGCAAACCTTCTCCCTTCACAAAGT
TCCCAAAAAATCAACCATGGCTCCGGATCTTCTGGCTGCCCGCAGCAACAGCGGCGGCATCGAA
GGCCGTGGCCGTGGCCGCCATCATGGGGGAGAAGGGCGGGGCAACGTGGGGCTTGTGGCGGACA
ATGGCGGTGCGGTGGTGCGGACTTGGGGGAGAAGTCCTACGGCGGTGCAGCCGTGGTGGTCGCG
GCTGTAGTGCTCACGAGCCTCGCGACGGTGAGTCGGTGAACGCGCTCGCGGTGGTCGCGGCATC
CCAGCGCTGGTGAGGCTCCTTCGCTGCGGCGGCGACGACGATGTGGCGCACGGGAGCGCCAGAT
GCTCCCACGACCCTGTACAAGCTCTGCAAGCTGCTCATCCTCCATTGATGCCCTCTGCAAGCTG
CTCATCCTCCCGGAGCTGACCGAAGGAGGGAGGAGGAAGAAGATGACGATGCCTATTGGTGTTC
AGAGTAATATTGTGGATTTCCTTTGGGTTGGAAATGGGTTGAGAATGGGTTGAATCCATTTGTC
TGCACTTGGTTTGGATTGGTTTGGGCTTGCTTTGTGAGTGGATTGGATTGGTTTGGTTTCTGCA
AACTATGAATTGAATTGGATTGGTTTAGAAGTGTACTATAGAGACAAGTGAACTGGGGCGGTTT
TGGTCTGGATCTCAGTCCATTAGCAGGCTTAGATGTACCGAATCTAGTTCATTCCTCTTTTTAA
ATTGCTATCCGGCAGAAAATTTCTCAATCTGTATGTTTAGCTATCTCAGAACTCTGGGTTCAGC
CCATATTCGATAAGATTAAACCTGGTCTATCTCCTGTTCTTGAATTATGTAAAGATTATTACAA
CTATGGATTGATGAGAATGAGTAAAAGAAGATCTTGATTTTTCTTGTGATATGAGTCTGTCAAG
TCTCTGATTCCTGTGATGTATAAAATCTATTTGTTTTCTGTTGTTGTGAATTCTCTTGTTCCTC
TTTGTAGTGATTTCTTTGCCTACCCACGTTCTGTTTTTTGCCACATCTCTTAGGTGTGTTCTGT
TTTTTTTGCCACATCTCTTAGGGGCATTGGAAAAGTAAAATCCCTAGCTGTAGCTAATTCTAGT
CCATTTAATTAATTGCAGTGGTTTCAGCGGTGTTGTTGCGCTCCCAGGCGGTAGGTTTCAACCT
TTGGATGATTTTTTGTCTGAGAATCCTTTTCTGTCACCTATTCCATTAGGAAGGCTCTATGAAA
ACATTGATCCAGCAAAGCCTTATATGCTAGAGGACCCTATTCGTCGGGCAGTATGGTCTGGATC
CCTTGCACCTTATATAGCCAACAAAGTGAAAATGTCCCTGAGCCACATCCTCACTAAGGAAAAT
GTGGGGGTGCATAAGGATTTTGGCTTGGTGGTGTTCAAAGATGTGCCAAAAAAGAGAGAGGGCA
TATCTGATTCGAGCGAAAACTACCAACACTACAGCAGTTTCTTGACAGAGACCATACAAAGGCT
TCATGGGTCTGAGTCCCTCAATTCCCTTCCAGTGGAAATGGATATATACCTTAAAGATTTGACA
GATCCGAATGTTAAGGAGGATGATATTGTGGACCATCCCATAGCACTACCAGGAAGGGTATTTG
GGGATGTTTCTGTTGAAGCCTATCGACTACTGCGCAAGCAATATCCTGTAGTAAAGAATGGGAA
GGAAATTTTAGCGCATCGCATTATTGAGGCTATTGGTGTAAAATTCAAGGATGCACTGACTGTG
TCTCTTGACAGTGGACTATTGCCAAAATTCTTACGTCTGAAATGGCAGAAGATATACCCAGCTA
ACAAATATCCATGGATACCTAAGCCCCAATTGATTATCTCACAAAAAGAGGCTGGAGAAATAGT
TACTGAGATTCACCGGCATGGATCTGTCCATTCGGTCGAAGTAGGTGTTGATGCTATTGTGACT
TCCAATTTCCCAGGTTTCTCTGGTGATAAGTTCACGCGCATGGAGGTACTGGCGCTCATCCGTC
GCATTTTCCCAGAATATCTCAACACGATATTTAAGGAATTCAAGATGGACAATCTATATGAAGA
TCTGCAAATTAGGGAAAGAAATCATATTCCCAGCCTGTACAGTGCTCAGGGCGATGGTGTTTAT
GCTGAAGTGATTGTCAAGTTCATTGGGTTTTGAAGCTTCGGTAAAATTCTTTATTCCATAGTTT
GCTCCACTGTTATGCCAATGACTATATTCCGTCGTTCAGGAACTAACATTTCATTTTCTTCAGG
CATGCGGGAGATGTAATGTT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021