Detail information of BGIOSGA011665_circ_ig.13


General Information
CircRNA Name BGIOSGA011665_circ_ig.13
ID in PlantcircBase osi_circ_004477
Alias 3:549205|554038
Organism Oryza sativa ssp. indica
Position chr3: 549205-554038  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA011665_circ_ig.4 BGIOSGA011665_circ_ig.5 BGIOSGA011665_circ_ig.6 BGIOSGA011665_circ_ig.7 BGIOSGA011665_circ_ig.8 BGIOSGA011665_circ_ig.9 BGIOSGA011665_circ_ig.10 BGIOSGA011665_circ_ig.11 BGIOSGA011665_circ_ig.12 BGIOSGA011665_circ_ig.14 BGIOSGA011665_circ_ig.15
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTCTGGGTTTTTGGATGGCGTTGTTCCTGTCAAGTACTTAGAGAAGATTGAAACGTGGCCAAG
GAGAGAACCGATACCATTTCAAAACTAGAGACCACGagatgtaagggggcaaatccaacgactg
aggaacagggtgaatggagagcagccttctcattatgtatcagcatgtgatgcaaagatatata
gtcttgtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGATGTAAGGGGGCAAATCCAACGACTGAGGAACAGGGTGAATGGAGAGCAGCCTTCTCATTAT
GTATCAGCATGTGATGCAAAGATATATAGTCTTGTTGTAAAGATCAAGATAATCAGATTATTAA
TTGGACCGTAGACAGTAGCATCAAGAACTTCCTCTTATCTAAAGCTCTAGTTAGGCCTTGTAAC
TAATTTGCTTGCACTAAAAACTTTTATGGGCATTCAGAGCTTGTTTGGTTGCTGCGCTGGCCTG
GGGGCTGTCGCTCAGGCATGTCGATCCAGCCGTAGGCGTACAAAATCGGACGCCTGAGAGTTGC
GCCTGAGTCAGGCGAGTTTTCCAGGACACGAAGCAAACAGGCTCTCAGTGACAAGGAAGCTGAA
ATCAGATGGCAATTAATGTGGATACGATACTTGCGCACAATCTTAACGAAGGTATGTTTAATGC
TTTCTTTTAGCTTTGGGTACATCTTGATTGCATTTTGGATGTTTTTTTATTGAGTAAATTGCAG
ATTGGTCCTGTTTTTATTACCAAAGTGTCACTTTGGGCCACCTCCAATTCAATCTTTCACTTAA
AGCCAGCTATTATTACCAATCCTTTGCAATTTGGGCTAGTGGCCCACCTGTCAGTAGGCGGTGG
AGGAGGAAGAGGAGCACGGCACGGCGATGGCGCCCGTGCCCCTAGATTGGCAAAGCAGCGGCGA
CGATGGCTCCAGCTCCGTGCAGCGGCGCCATCACCACCATGGGCGGCCTGAGCACCGACGCCCT
ATCCCTCTCCTTCTCTACTGTTGCTCGACCTGGAGAAGAAGAAACAGAAAGAGAGAAGGAAGAA
GGAAGAAAGAGAAACAGAAAAGAGGACAGCAGCAGAGGAGTTCGCAAGCCTTCTGACAGGTGGG
CCACTAGCCCAAATTGCAAAGGATTGGTAACAATAGCTGGCTTTAAGTGAAAAGATTGAATTGG
AGGTAGCCCAAAGTGACACTTTGGTAATAAAAGCTGGACCAATCTGCAATTTACTCTTTTTTAT
TCTATTAGTGGGTTCAAGGGAATAATATAAGGCAAATTACTTCCTTTTCAAAATCTAGGATACC
GTTGACTTTTCGTACTAACATTTGACCGTTCGTCTTATTCAAAAATTTAATATAAATATGTAAT
TGTATAAGCTAAGATTATATTGTAGAAATTTAATATAATTAAATGATATAAGGCAAATGGTCAA
ACATTATGCTAAAAATCAATGACGTCATACATTTTGAAATGGAGGGAGTACTTGATTTTTGTTC
TTGTGAGATGAGGTTGCAAGTCTCCTCTGTAATGATGTATAAACTTGCCTGCCCAAAAATAATA
ATAATAAAAATCTGGCCCAACTGTTGTTAGGTTTATTTTGTGACAGAAAATTTCGTGGTAGTAA
AAATTCCAGAAAGTAATAGTAGTATATATAGTAGTAAATAATAACAAAGAAGGATTTTTTTTTG
TCCATGTGGAGCATACTGGGCCCATGGATCTATTTAGTTGGGGATGTGGGCCGAATAAGCTGTT
TCGTGGGCCTGCGGATCTGCTAACTCGAGCTGCTAGGTCTCCATCAGTACCCTGTGCTTGCCTC
CTCCATACCCTCGCCTCGACCTCGAGAAGGGGGGGCGGCGGCTGCTGCTCGCGCTCGGCTACTC
CGGCCAAGGACGTCAACCTCAGCCGGCCCCGACGCCTGCCCCCTTGCCCCAACTTCCCCGCGTT
AAGGTAAATTGCATTCCCTCGTCACTTCACTTGGATCATTTCCGTGTTCGCGGTGGCTCTAAGG
CCCGCTTTTTTTTTATCATCTCAGATCAAGAACCGAGGGTTTCTCACTGCAAAGGCTTGGTTTT
TGCCTGAGAGGAGATGTCTAGGAAGAGAGCTTTCTGCACGGCAGTGGAGACTGGCAGAAAAACT
CCAGAGTTTTGCTATCTTCTGTATGTTCAGCTATCTCAGAACCTTTTATTTAATTCATATTTTG
TAGGATTAGACCTGGTCTATCTCCTGTCCTTGAATTGTTTTTAAAGATTATTACAAGTATGGAT
TGAGAATGAGGAAAAATAAAAAGAACTACATGATTTCTTTATGATGATGTACCTAAGCCTGCTG
ATGGACTGGGTTTAAGTGGATATAGTGGGTTGGATTTCAGTGTGGGTTAGCTTTGGGCGGGTGG
AAATGGGTTGCTGCACCTGATGGATTGGACTGGTTTGGATGGAGATGGGAAATGGTTTAGATTG
GTTTAGTTTTGGCTGCAAAAGTTTGGTCCCAGATTGGATTCAACCGATGGGTATCCACTGGATT
GGCCCCAATCCCATCGTCTCCCTGAGAAGTCGACAACCACACCGCCGCCATCGCTAGCTCAACT
TCGTCGCAGGTGGCTTGCTACCTTCCTCTCCCTCCTCCGGCAAACCTTCTCCCTTCACAAAGTT
CCCAAAAAATCAACCATGGCTCCGGATCTTCTGGCTGCCCGCAGCAACAGCGGCGGCATCGAAG
GCCGTGGCCGTGGCCGCCATCATGGGGGAGAAGGGCGGGGCAACGTGGGGCTTGTGGCGGACAA
TGGCGGTGCGGTGGTGCGGACTTGGGGGAGAAGTCCTACGGCGGTGCAGCCGTGGTGGTCGCGG
CTGTAGTGCTCACGAGCCTCGCGACGGTGAGTCGGTGAACGCGCTCGCGGTGGTCGCGGCATCC
CAGCGCTGGTGAGGCTCCTTCGCTGCGGCGGCGACGACGATGTGGCGCACGGGAGCGCCAGATG
CTCCCACGACCCTGTACAAGCTCTGCAAGCTGCTCATCCTCCATTGATGCCCTCTGCAAGCTGC
TCATCCTCCCGGAGCTGACCGAAGGAGGGAGGAGGAAGAAGATGACGATGCCTATTGGTGTTCA
GAGTAATATTGTGGATTTCCTTTGGGTTGGAAATGGGTTGAGAATGGGTTGAATCCATTTGTCT
GCACTTGGTTTGGATTGGTTTGGGCTTGCTTTGTGAGTGGATTGGATTGGTTTGGTTTCTGCAA
ACTATGAATTGAATTGGATTGGTTTAGAAGTGTACTATAGAGACAAGTGAACTGGGGCGGTTTT
GGTCTGGATCTCAGTCCATTAGCAGGCTTAGATGTACCGAATCTAGTTCATTCCTCTTTTTAAA
TTGCTATCCGGCAGAAAATTTCTCAATCTGTATGTTTAGCTATCTCAGAACTCTGGGTTCAGCC
CATATTCGATAAGATTAAACCTGGTCTATCTCCTGTTCTTGAATTATGTAAAGATTATTACAAC
TATGGATTGATGAGAATGAGTAAAAGAAGATCTTGATTTTTCTTGTGATATGAGTCTGTCAAGT
CTCTGATTCCTGTGATGTATAAAATCTATTTGTTTTCTGTTGTTGTGAATTCTCTTGTTCCTCT
TTGTAGTGATTTCTTTGCCTACCCACGTTCTGTTTTTTGCCACATCTCTTAGGTGTGTTCTGTT
TTTTTTGCCACATCTCTTAGGGGCATTGGAAAAGTAAAATCCCTAGCTGTAGCTAATTCTAGTC
CATTTAATTAATTGCAGTGGTTTCAGCGGTGTTGTTGCGCTCCCAGGCGGTAGGTTTCAACCTT
TGGATGATTTTTTGTCTGAGAATCCTTTTCTGTCACCTATTCCATTAGGAAGGCTCTATGAAAA
CATTGATCCAGCAAAGCCTTATATGCTAGAGGACCCTATTCGTCGGGCAGTATGGTCTGGATCC
CTTGCACCTTATATAGCCAACAAAGTGAAAATGTCCCTGAGCCACATCCTCACTAAGGAAAATG
TGGGGGTGCATAAGGATTTTGGCTTGGTGGTGTTCAAAGATGTGCCAAAAAAGAGAGAGGGCAT
ATCTGATTCGAGCGAAAACTACCAACACTACAGCAGTTTCTTGACAGAGACCATACAAAGGCTT
CATGGGTCTGAGTCCCTCAATTCCCTTCCAGTGGAAATGGATATATACCTTAAAGATTTGACAG
ATCCGAATGTTAAGGAGGATGATATTGTGGACCATCCCATAGCACTACCAGGAAGGGTATTTGG
GGATGTTTCTGTTGAAGCCTATCGACTACTGCGCAAGCAATATCCTGTAGTAAAGAATGGGAAG
GAAATTTTAGCGCATCGCATTATTGAGGCTATTGGTGTAAAATTCAAGGATGCACTGACTGTGT
CTCTTGACAGTGGACTATTGCCAAAATTCTTACGTCTGAAATGGCAGAAGATATACCCAGCTAA
CAAATATCCATGGATACCTAAGCCCCAATTGATTATCTCACAAAAAGAGGCTGGAGAAATAGTT
ACTGAGATTCACCGGCATGGATCTGTCCATTCGGTCGAAGTAGGTGTTGATGCTATTGTGACTT
CCAATTTCCCAGGTTTCTCTGGTGATAAGTTCACGCGCATGGAGGTACTGGCGCTCATCCGTCG
CATTTTCCCAGAATATCTCAACACGATATTTAAGGAATTCAAGATGGACAATCTATATGAAGAT
CTGCAAATTAGGGAAAGAAATCATATTCCCAGCCTGTACAGTGCTCAGGGCGATGGTGTTTATG
CTGAAGTGATTGTCAAGTTCATTGGGTTTTGAAGCTTCGGTAAAATTCTTTATTCCATAGTTTG
CTCCACTGTTATGCCAATGACTATATTCCGTCGTTCAGGAACTAACATTTCATTTTCTTCAGGC
ATGCGGGAGATGTAATGTTTGGATGTCAGCAAGCGCTGCAAGTTCTGATAGCTAAAGAGGTGAT
TCTGGGTTTTTGGATGGCGTTGTTCCTGTCAAGTACTTAGAGAAGATTGAAACGTGGCCAAGGA
GAGAACCGATACCATTTCAAAACTAGAGACCACG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description leaf senescence
Other Information
References Huang et al., 2021