Plant Circular RNA Database

Detail information of Os06g0486400_circ_g.15

			
						 General Information
					
						CircRNA Name
						Os06g0486400_circ_g.15
					
						ID in PlantcircBase
						osa_circ_030882
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr6: 16609947-16615291  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os06g0486400						
					
						Parent gene annotation
						
							Serine/threonine protein kinase domain containing protein. (Os06
t0486400-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os06g0486400_circ_g.14 Os06g0486400_circ_g.16 Os06g0486400_circ_g.17 Os06g0486400_circ_g.18 Os06g0486400_circ_g.19 Os06g0486400_circ_g.20 Os06g0486400_circ_g.21 Os06g0486400_circ_g.22 Os06g0486400_circ_g.23 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os06t0486400-01:9

General Information
CircRNA Name	Os06g0486400_circ_g.15
ID in PlantcircBase	osa_circ_030882
Alias	NA
Organism	Oryza sativa
Position	chr6: 16609947-16615291 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer
Parent gene	Os06g0486400
Parent gene annotation	Serine/threonine protein kinase domain containing protein. (Os06 t0486400-01)
Parent gene strand	-
Alternative splicing	Os06g0486400_circ_g.14 Os06g0486400_circ_g.16 Os06g0486400_circ_g.17 Os06g0486400_circ_g.18 Os06g0486400_circ_g.19 Os06g0486400_circ_g.20 Os06g0486400_circ_g.21 Os06g0486400_circ_g.22 Os06g0486400_circ_g.23
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os06t0486400-01:9

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AAGGTGTTGTATTGCCAAACACGATAGTTAAGTAGAAACCACAAAAGCTACCGAAATGGCTAGC
AGCAAGCGTACTTTGGCAGTCCGGCAGTAGTACACGaagggcggctgcatttttcaagtcctcc
agattgaagttccaaccactgattcctcgtatgtactctttctgaaaagcaaaagtcagtaata
gcctattg

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1468
Transcript exons: 16609947-16610015,16610609-16610674,16610748-16610918,16
610993-16611061,16611150-16611231,16611320-16611364,1661
1680-16611804,16612416-16612670,16614706-16615291
AAGGGCGGCTGCATTTTTCAAGTCCTCCAGATTGAAGTTCCAACCACTGATTCCTCGTATGTAC
TCTTTCTGTGATAGTTGCTCCTTGCTCTCTGAACCAAGCTTATTACTAAGAAGCAAGTCAGCCT
CTTTTCCCTTCAATGTCCTAAAGCGTTCACCCAGCGGGGGGAGGCCGTCAAGAATACTTCGTGC
AAGAAATTCAGCTGTACGTGCATGCTTAAAAAAAGAATGCTTCAAGAGCTTTTCTGAAGATGGA
CGCTTGCGTGGATCCTTGACTAAGCAAGTTGCAACCAAATCCTTGAAAGACTTTGAAAATCGCT
TGTCCCTCTCATAGTCTAGACCTGGTGGTGCATTTTGCAAGGTCATAAGCAATACCTTCATTGG
AGGGTACTTTGAAAATGGAGCATGACCATGTGCTAGTTCCAATGCCGTTATACCAAAGGACCAA
ATGTCAGCTTTGTAATCATAACCATGCAGTTGTTGCATAACTTCTGGAGCCATCCAGCAAGGGG
TCCCTACAAAAGTGTTTCGTGCTCTTTGCCTATTCCCAGTATCAAACATGCAGGCTGACACTCC
AAAGTCTCCTAGCTTGACAGCTCCATTTGTATCTATTAGGATATTTCCAGCCTTTACATCTCTG
TGAATATGCCCTTGGGAGTGTAGGTAGACAAGAGCTTTAAGAACCTCCCGCAAAAGAGTTGCAA
TGACTGGCTCCTCAAACCCATCTGGAAAAGAAGTTTTCATAATGTGCAGAGCAGATCCAGCGGC
CATGTAAGGCATAATAACCCAAAGCTGATGACCATTTGTAAACGAGCAATATGCTCGAAGAAGA
TTTGGATGATCAATCAAGCTCATGGTTTGTACTTCTCGTCTTATCCCATCCAGGTCATTACTGC
ACTTCTCAAGGTCAAGAACTTTAATGGCAACTTCAATATTAAGTGGGATACAAAGAGCTTTGTA
CACCGTAGCACTAACACCATCTCCAACTTCCTCACATAATTTATATTCTTTGGGATCTGTTGGA
AATCTCCTTGCATGCTCCATGGCTCAAATTCAAAGAGCATCATGCGCAATAACCACAGAGTTAC
AATTACCATAGCACACAGAAGCAGAAGGCAATAGCACGAACACCTTGTAGCAGCGACAGAGAAC
AACCAGCAGCATGACTAAGTCTATAGGCGAATGTACAGTCCAATATAGTTCTTAATTATCCAGT
CTATCTTTCAAGCATCCTTTGGTCCAAGGTGTTGTATTGCCAAACACGATAGTTAAGTAGAAAC
CACAAAAGCTACCGAAATGGCTAGCAGCAAGCGTACTTTGGCATCCAGTCTTAATTATCCAGTC
TATCTTTCAAGCATCCTTTGGTCCAAGGTGTTGTATTGCCAAACACGATAGTTAAGTAGAAACC
ACAAAAGCTACCGAAATGGCTAGCAGCAAGCGTACTTTGGCAGTCCGGCAGTAGTACACG
						
					

						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.						
					

			
		

Sequences
Splice junction sequence	AAGGTGTTGTATTGCCAAACACGATAGTTAAGTAGAAACCACAAAAGCTACCGAAATGGCTAGC AGCAAGCGTACTTTGGCAGTCCGGCAGTAGTACACGaagggcggctgcatttttcaagtcctcc agattgaagttccaaccactgattcctcgtatgtactctttctgaaaagcaaaagtcagtaata gcctattg
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1468 Transcript exons: 16609947-16610015,16610609-16610674,16610748-16610918,16 610993-16611061,16611150-16611231,16611320-16611364,1661 1680-16611804,16612416-16612670,16614706-16615291 AAGGGCGGCTGCATTTTTCAAGTCCTCCAGATTGAAGTTCCAACCACTGATTCCTCGTATGTAC TCTTTCTGTGATAGTTGCTCCTTGCTCTCTGAACCAAGCTTATTACTAAGAAGCAAGTCAGCCT CTTTTCCCTTCAATGTCCTAAAGCGTTCACCCAGCGGGGGGAGGCCGTCAAGAATACTTCGTGC AAGAAATTCAGCTGTACGTGCATGCTTAAAAAAAGAATGCTTCAAGAGCTTTTCTGAAGATGGA CGCTTGCGTGGATCCTTGACTAAGCAAGTTGCAACCAAATCCTTGAAAGACTTTGAAAATCGCT TGTCCCTCTCATAGTCTAGACCTGGTGGTGCATTTTGCAAGGTCATAAGCAATACCTTCATTGG AGGGTACTTTGAAAATGGAGCATGACCATGTGCTAGTTCCAATGCCGTTATACCAAAGGACCAA ATGTCAGCTTTGTAATCATAACCATGCAGTTGTTGCATAACTTCTGGAGCCATCCAGCAAGGGG TCCCTACAAAAGTGTTTCGTGCTCTTTGCCTATTCCCAGTATCAAACATGCAGGCTGACACTCC AAAGTCTCCTAGCTTGACAGCTCCATTTGTATCTATTAGGATATTTCCAGCCTTTACATCTCTG TGAATATGCCCTTGGGAGTGTAGGTAGACAAGAGCTTTAAGAACCTCCCGCAAAAGAGTTGCAA TGACTGGCTCCTCAAACCCATCTGGAAAAGAAGTTTTCATAATGTGCAGAGCAGATCCAGCGGC CATGTAAGGCATAATAACCCAAAGCTGATGACCATTTGTAAACGAGCAATATGCTCGAAGAAGA TTTGGATGATCAATCAAGCTCATGGTTTGTACTTCTCGTCTTATCCCATCCAGGTCATTACTGC ACTTCTCAAGGTCAAGAACTTTAATGGCAACTTCAATATTAAGTGGGATACAAAGAGCTTTGTA CACCGTAGCACTAACACCATCTCCAACTTCCTCACATAATTTATATTCTTTGGGATCTGTTGGA AATCTCCTTGCATGCTCCATGGCTCAAATTCAAAGAGCATCATGCGCAATAACCACAGAGTTAC AATTACCATAGCACACAGAAGCAGAAGGCAATAGCACGAACACCTTGTAGCAGCGACAGAGAAC AACCAGCAGCATGACTAAGTCTATAGGCGAATGTACAGTCCAATATAGTTCTTAATTATCCAGT CTATCTTTCAAGCATCCTTTGGTCCAAGGTGTTGTATTGCCAAACACGATAGTTAAGTAGAAAC CACAAAAGCTACCGAAATGGCTAGCAGCAAGCGTACTTTGGCATCCAGTCTTAATTATCCAGTC TATCTTTCAAGCATCCTTTGGTCCAAGGTGTTGTATTGCCAAACACGATAGTTAAGTAGAAACC ACAAAAGCTACCGAAATGGCTAGCAGCAAGCGTACTTTGGCAGTCCGGCAGTAGTACACG
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.322277637

Conservation Information
Conserved circRNAs	NA
PMCS	0.322277637

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							16614869-16615156(-)
16609962-16615221(-)
						
						Potential amino acid sequence
						
							MEHARRFPTDPKEYKLCEEVGDGVSATVYKALCIPLNIEVAIKVLDLEKCSNDLDGIRREVQTM
SLIDHPNLLRAYCSFTNGHQLWVIMPYMAAGSALHIMKTSFPDGFEEPVIATLLREVLKALVYL
HSQGHIHRDVKAGNILIDTNGAVKLGDFGVSACMFDTGNRQRARNTFVGTPCWMAPEVMQQLHG
YDYKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKSFKDLVATCL
VKDPRKRPSSEKLLKHSFFKHARTAEFLARSILDGLPPLGERFRTLKGKEADLLLSNKLGSESK
EQLSQKEYIRGISGWNFNLEDLKNAAALRVLLPDCQSTLAASHFGSFCGFYLTIVFGNTTPWTK
GCLKDRLDN*(-)
MQPPFVYYCRTAKVRLLLAISVAFVVST*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	16614869-16615156(-) 16609962-16615221(-)
Potential amino acid sequence	MEHARRFPTDPKEYKLCEEVGDGVSATVYKALCIPLNIEVAIKVLDLEKCSNDLDGIRREVQTM SLIDHPNLLRAYCSFTNGHQLWVIMPYMAAGSALHIMKTSFPDGFEEPVIATLLREVLKALVYL HSQGHIHRDVKAGNILIDTNGAVKLGDFGVSACMFDTGNRQRARNTFVGTPCWMAPEVMQQLHG YDYKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKSFKDLVATCL VKDPRKRPSSEKLLKHSFFKHARTAEFLARSILDGLPPLGERFRTLKGKEADLLLSNKLGSESK EQLSQKEYIRGISGWNFNLEDLKNAAALRVLLPDCQSTLAASHFGSFCGFYLTIVFGNTTPWTK GCLKDRLDN(-) MQPPFVYYCRTAKVRLLLAISVAFVVST(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os06g0486400_circ_g.15

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