Plant Circular RNA Database

Detail information of Os03g0750800_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os03g0750800_circ_g.2
					
						ID in PlantcircBase
						osa_circ_021925
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr3: 30937538-30939142  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os03g0750800						
					
						Parent gene annotation
						
							Similar to Transcriptional adaptor (Fragment). (Os03t0750800-01)
;Similar to cDNA clone:J023128E10, full insert sequence. (Os03t0
750800-02);Similar to cDNA clone:J023128E10, full insert sequenc
e. (Os03t0750800-03)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os03g0750800_circ_g.1 Os03g0750800_circ_g.3 Os03g0750800_circ_g.4 Os03g0750800_circ_g.5 Os03g0750800_circ_g.6 Os03g0750800_circ_g.7 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os03t0750800-01:5
Os03t0750800-02:4
Os03t0750800-03:5

General Information
CircRNA Name	Os03g0750800_circ_g.2
ID in PlantcircBase	osa_circ_021925
Alias	NA
Organism	Oryza sativa
Position	chr3: 30937538-30939142 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os03g0750800
Parent gene annotation	Similar to Transcriptional adaptor (Fragment). (Os03t0750800-01) ;Similar to cDNA clone:J023128E10, full insert sequence. (Os03t0 750800-02);Similar to cDNA clone:J023128E10, full insert sequenc e. (Os03t0750800-03)
Parent gene strand	-
Alternative splicing	Os03g0750800_circ_g.1 Os03g0750800_circ_g.3 Os03g0750800_circ_g.4 Os03g0750800_circ_g.5 Os03g0750800_circ_g.6 Os03g0750800_circ_g.7
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os03t0750800-01:5 Os03t0750800-02:4 Os03t0750800-03:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AATGCCAGCAAGTGTAAAGCAAGAACAGCATACTTGACCCTTGGGGGAGAAAATGGAGACTCGT
CCTTAGGGGTCAAATCCCCTGGTAACACTGAAGTTCctgaagctcttgaatcctccttcgaatt
ttccgttcctcaagaacactcctaacaagtgcttcatgttcctccttagaaaggaaacgcatga
acacctta

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 626
Transcript exons: 30937538-30937748,30938049-30938271,30938751-30938816,30
938936-30938994,30939076-30939142
CTGAAGCTCTTGAATCCTCCTTCGAATTTTCCGTTCCTCAAGAACACTCCTAACAAGTGCTTCA
TGTTCCTCCTTAGAAAGGAAACGCATGAACACCTTATAGCGATGGTAAACTTCCTTGTCTTCAT
TTGTGAGATCCTTCTCCAAAGGATTAGGAAATAGTAAGTTTCTTTCCAGTATGAACTCTTTTCT
CCTTTTTCTTTCATCAAGCCTTGACAAGTAAATACGCAATACCCTTAGCTTCAGTTCACGATCA
GTTTCCGAATCAGTTTCTTTAAACTCCATCTCAGCGAGTGCCTGTTCAGCATCGTTATCATACT
CTGGGTCAAATTCATGTCTCTTTGAATTGTATCCACTCAGTTCAGTCAAAGAAGGCCCTTCATC
TGCAGAATATCGGGGTTTTTTCACACCTATACTTCTATCCACATGACCATCTTCAACTTTTGCT
ACATTAGCACCATCTTTGAATTGTCCAACATTTGATGCTTTCTTATTTGCACCCCCAGCTATGT
GTGAAGGTGATCGACCAGCTAAACCTTCTCCAAGTGCATCTTCCACCTTGACCCTTGGGGGAGA
AAATGGAGACTCGTCCTTAGGGGTCAAATCCCCTGGTAACACTGAAGTTC
						
					

						Genomic sequence
						
							CTGAAGCTCTTGAATCCTCCTTCGAATTTTCCGTTCCTCAAGAACACTCCTAACAAGTGCTTCA
TGTTCCTCCTTAGAAAGGAAACGCATGAACACCTTATAGCGATGGTAAACTTCCTTGTCTTCAT
TTGTGAGATCCTTCTCCAAAGGATTAGGAAATAGTAAGTTTCTTTCCAGTATGAACTCTTTTCT
CCTTTTTCTTTCATCAAGCCTACAAATGCAACAAAGAAATGAATTCTCTTTATGGACCAAAACG
CATAATATGGCTGTGTGAGATAGACATAACTTCAAGTAGGATATTTGGATTATCAGAAAATTCA
GTGACAGGCATTTAGCAAATCACCAAAAAAAGCGAAGATATGTACTGATTTAGTTAGAAACTAA
AGCAATGGAAAAGGCTTTCATCATAATAACTAAGATGAACAGAAAAAGATGCTGATCTTCTTAA
TCTCCATAATGAAGTTACTGCAATAATACAGTTAAAATAATTGCATCAGCACTGTTAACCAACC
TTGACAAGTAAATACGCAATACCCTTAGCTTCAGTTCACGATCAGTTTCCGAATCAGTTTCTTT
AAACTCCATCTCAGCGAGTGCCTGTTCAGCATCGTTATCATACTCTGGGTCAAATTCATGTCTC
TTTGAATTGTATCCACTCAGTTCAGTCAAAGAAGGCCCTTCATCTGCAGAATATCGGGGTTTTT
TCACACCTATACTTCTATCCACATGACCATCTGCGACATGCAAGTTAAACAAGGCAATATTAAA
GTAAACAGATGTACATAAACATGAAAAGTTCAGGATGCGTGGTGTATACTTCGATACGGTAAAG
AAAATGAGTTTCCCACAAACACAGTAAAGAAAATGAGTTTCCCACAAACACTTCACACCCCACA
TAAATAAATAAAAAAGTAACTTTAGTTCATTTTGCTGCCAGTATAAAATTCTGGCAAACATAAT
TTTGGTGCTGTTATTTTTTGTAGTTCCATTCCTAAGAATGTGACAAGCATGATTAGACATATCC
TAAAGGTTGAAATTTGAGAGCTTCGGAGTCCATGCCAAGAATTGTTCCGTTTAAGTTTGATCTG
GTCACCCATGACTGGTTATAACGAATTAACGATAAATGTAAGTAATGTTTTATAGACACCAGTG
CAACGCTGAATGATATGTGTAGAATGCAAAATAAGACTGTTGTGTTCAGTTAGGATTATACCTT
CAACTTTTGCTACATTAGCACCATCTTTGAATTGTCCAACATTTGATGCTTTCTTATTTGCACC
TGGACAGATTCAACAGCATCAGCATAATGTGATAGCGCATTTCCATAAAATATACAAATATAAA
GATATATTGTTTCAGAATTTAATTGTTCAAGGTTGTCATGTCAATGAGACGTACCCCCAGCTAT
GTGTGAAGGTGATCGACCAGCTAAACCTTCTCCAAGTGCATCTTCCACCCTATGCAAGTTAAAA
AGTTGGTAAACAACCTATTGCAAATTTCAGAGTAATGCCAGCAAGTGTAAAGCAAGAACAGCAT
ACTTGACCCTTGGGGGAGAAAATGGAGACTCGTCCTTAGGGGTCAAATCCCCTGGTAACACTGA
AGTTC
						
					

			
		

Sequences
Splice junction sequence	AATGCCAGCAAGTGTAAAGCAAGAACAGCATACTTGACCCTTGGGGGAGAAAATGGAGACTCGT CCTTAGGGGTCAAATCCCCTGGTAACACTGAAGTTCctgaagctcttgaatcctccttcgaatt ttccgttcctcaagaacactcctaacaagtgcttcatgttcctccttagaaaggaaacgcatga acacctta
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 626 Transcript exons: 30937538-30937748,30938049-30938271,30938751-30938816,30 938936-30938994,30939076-30939142 CTGAAGCTCTTGAATCCTCCTTCGAATTTTCCGTTCCTCAAGAACACTCCTAACAAGTGCTTCA TGTTCCTCCTTAGAAAGGAAACGCATGAACACCTTATAGCGATGGTAAACTTCCTTGTCTTCAT TTGTGAGATCCTTCTCCAAAGGATTAGGAAATAGTAAGTTTCTTTCCAGTATGAACTCTTTTCT CCTTTTTCTTTCATCAAGCCTTGACAAGTAAATACGCAATACCCTTAGCTTCAGTTCACGATCA GTTTCCGAATCAGTTTCTTTAAACTCCATCTCAGCGAGTGCCTGTTCAGCATCGTTATCATACT CTGGGTCAAATTCATGTCTCTTTGAATTGTATCCACTCAGTTCAGTCAAAGAAGGCCCTTCATC TGCAGAATATCGGGGTTTTTTCACACCTATACTTCTATCCACATGACCATCTTCAACTTTTGCT ACATTAGCACCATCTTTGAATTGTCCAACATTTGATGCTTTCTTATTTGCACCCCCAGCTATGT GTGAAGGTGATCGACCAGCTAAACCTTCTCCAAGTGCATCTTCCACCTTGACCCTTGGGGGAGA AAATGGAGACTCGTCCTTAGGGGTCAAATCCCCTGGTAACACTGAAGTTC
Genomic sequence	CTGAAGCTCTTGAATCCTCCTTCGAATTTTCCGTTCCTCAAGAACACTCCTAACAAGTGCTTCA TGTTCCTCCTTAGAAAGGAAACGCATGAACACCTTATAGCGATGGTAAACTTCCTTGTCTTCAT TTGTGAGATCCTTCTCCAAAGGATTAGGAAATAGTAAGTTTCTTTCCAGTATGAACTCTTTTCT CCTTTTTCTTTCATCAAGCCTACAAATGCAACAAAGAAATGAATTCTCTTTATGGACCAAAACG CATAATATGGCTGTGTGAGATAGACATAACTTCAAGTAGGATATTTGGATTATCAGAAAATTCA GTGACAGGCATTTAGCAAATCACCAAAAAAAGCGAAGATATGTACTGATTTAGTTAGAAACTAA AGCAATGGAAAAGGCTTTCATCATAATAACTAAGATGAACAGAAAAAGATGCTGATCTTCTTAA TCTCCATAATGAAGTTACTGCAATAATACAGTTAAAATAATTGCATCAGCACTGTTAACCAACC TTGACAAGTAAATACGCAATACCCTTAGCTTCAGTTCACGATCAGTTTCCGAATCAGTTTCTTT AAACTCCATCTCAGCGAGTGCCTGTTCAGCATCGTTATCATACTCTGGGTCAAATTCATGTCTC TTTGAATTGTATCCACTCAGTTCAGTCAAAGAAGGCCCTTCATCTGCAGAATATCGGGGTTTTT TCACACCTATACTTCTATCCACATGACCATCTGCGACATGCAAGTTAAACAAGGCAATATTAAA GTAAACAGATGTACATAAACATGAAAAGTTCAGGATGCGTGGTGTATACTTCGATACGGTAAAG AAAATGAGTTTCCCACAAACACAGTAAAGAAAATGAGTTTCCCACAAACACTTCACACCCCACA TAAATAAATAAAAAAGTAACTTTAGTTCATTTTGCTGCCAGTATAAAATTCTGGCAAACATAAT TTTGGTGCTGTTATTTTTTGTAGTTCCATTCCTAAGAATGTGACAAGCATGATTAGACATATCC TAAAGGTTGAAATTTGAGAGCTTCGGAGTCCATGCCAAGAATTGTTCCGTTTAAGTTTGATCTG GTCACCCATGACTGGTTATAACGAATTAACGATAAATGTAAGTAATGTTTTATAGACACCAGTG CAACGCTGAATGATATGTGTAGAATGCAAAATAAGACTGTTGTGTTCAGTTAGGATTATACCTT CAACTTTTGCTACATTAGCACCATCTTTGAATTGTCCAACATTTGATGCTTTCTTATTTGCACC TGGACAGATTCAACAGCATCAGCATAATGTGATAGCGCATTTCCATAAAATATACAAATATAAA GATATATTGTTTCAGAATTTAATTGTTCAAGGTTGTCATGTCAATGAGACGTACCCCCAGCTAT GTGTGAAGGTGATCGACCAGCTAAACCTTCTCCAAGTGCATCTTCCACCCTATGCAAGTTAAAA AGTTGGTAAACAACCTATTGCAAATTTCAGAGTAATGCCAGCAAGTGTAAAGCAAGAACAGCAT ACTTGACCCTTGGGGGAGAAAATGGAGACTCGTCCTTAGGGGTCAAATCCCCTGGTAACACTGA AGTTC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.231273437

Conservation Information
Conserved circRNAs	NA
PMCS	0.231273437

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							30938945-30937587(+)
30937745-30939111(-)
30938124-30939118(-)
						
						Potential amino acid sequence
						
							MCEGDRPAKPSPSASSTLTLGGENGDSSLGVKSPGNTEVPEALESSFEFSVPQEHS*(+)
MKEKGEKSSYWKETYYFLILWRRISQMKTRKFTIAIRCSCVSFLRRNMKHLLGVFLRNGKFEGG
FKSFRNFSVTRGFDP*(-)
MEFKETDSETDRELKLRVLRIYLSRLDERKRRKEFILERNLLFPNPLEKDLTNEDKEVYHRYKV
FMRFLSKEEHEALVRSVLEERKIRRRIQELQELQCYQGI*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	30938945-30937587(+) 30937745-30939111(-) 30938124-30939118(-)
Potential amino acid sequence	MCEGDRPAKPSPSASSTLTLGGENGDSSLGVKSPGNTEVPEALESSFEFSVPQEHS(+) MKEKGEKSSYWKETYYFLILWRRISQMKTRKFTIAIRCSCVSFLRRNMKHLLGVFLRNGKFEGG FKSFRNFSVTRGFDP(-) MEFKETDSETDRELKLRVLRIYLSRLDERKRRKEFILERNLLFPNPLEKDLTNEDKEVYHRYKV FMRFLSKEEHEALVRSVLEERKIRRRIQELQELQCYQGI*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os03g0750800_circ_g.2

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