Detail information of Os03g0750800_circ_g.6


General Information
CircRNA Name Os03g0750800_circ_g.6
ID in PlantcircBase osa_circ_021929
Alias NA
Organism Oryza sativa
Position chr3: 30938751-30938994  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene Os03g0750800
Parent gene annotation Similar to Transcriptional adaptor (Fragment). (Os03t0750800-01)
;Similar to cDNA clone:J023128E10, full insert sequence. (Os03t0
750800-02);Similar to cDNA clone:J023128E10, full insert sequenc
e. (Os03t0750800-03)
Parent gene strand -
Alternative splicing Os03g0750800_circ_g.1 Os03g0750800_circ_g.2 Os03g0750800_circ_g.3 Os03g0750800_circ_g.4 Os03g0750800_circ_g.5 Os03g0750800_circ_g.7
Support reads 1
Tissues seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0750800-01:2
Os03t0750800-03:2
Os03t0750800-02:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAATTTAATTGTTCAAGGTTGTCATGTCAATGAGACGTACCCCCAGCTATGTGTGAAGGTGAT
CGACCAGCTAAACCTTCTCCAAGTGCATCTTCCACCcttcaacttttgctacattagcaccatc
tttgaattgtccaacatttgatgctttcttatttgcacctggacagattcaacagcatcagcat
aatgtgat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCAACTTTTGCTACATTAGCACCATCTTTGAATTGTCCAACATTTGATGCTTTCTTATTTGC
ACCTGGACAGATTCAACAGCATCAGCATAATGTGATAGCGCATTTCCATAAAATATACAAATAT
AAAGATATATTGTTTCAGAATTTAATTGTTCAAGGTTGTCATGTCAATGAGACGTACCCCCAGC
TATGTGTGAAGGTGATCGACCAGCTAAACCTTCTCCAAGTGCATCTTCCACC
Conservation Information
Conserved circRNAs NA
PMCS 0.188999044
Functional Information
Coding potential Y
Potential coding position 30938800-30938796(+)
30938945-30938768(+)
Potential amino acid sequence MLSYLHPQLCVKVIDQLNLLQVHLPPFNFCYISTIFELSNI*(+)
MCEGDRPAKPSPSASSTLQLLLH*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017